RNA id: TU423678


Basic Information

Item Value
RNA id TU423678
length 223
lncRNA type intronic
GC content 0.39
exon number 1
gene id G371004
representative True

Chromosome Information

Item Value
chromosome id CI01000168
NCBI id null
chromosome length 1293618
location 749980 ~ 750202 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGAATCAGTGGTTCGGAGCGTGTATCAAACTGGCAAAGTCACGTGATTTCGGTAAACGAAGCTTCATTATGTCATAAGTGTTTCGAAACATTTTGAAATTTCAATGGTTTGCAGTTTGATTCACACTCCGAACCACTGATTCAAAACAAAAGATTCGTAAAGCTTCGAAGCTTCATGAAGCAGTGTTGTGAAATCGCCCATCAGTAGATATCGTTGAATATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU423635 lncRNA downstream 239 746885 ~ 749741 (-) True G370976
TU423670 lncRNA downstream 22401 727300 ~ 727579 (-) True G371002
TU423667 lncRNA downstream 23115 723206 ~ 726865 (-) True G371001
TU423249 lncRNA downstream 39244 710502 ~ 710736 (-) True G370642
TU423231 lncRNA downstream 50411 699345 ~ 699569 (-) True G370626
TU423636 lncRNA upstream 293 750495 ~ 755299 (-) True G370977
TU423627 lncRNA upstream 20388 770590 ~ 771253 (-) True G370968
TU423645 lncRNA upstream 172051 922253 ~ 929504 (-) True G370986
TU423640 lncRNA upstream 264858 1015060 ~ 1020895 (-) True G370981
TU423638 lncRNA upstream 292434 1042636 ~ 1043681 (-) True G370979
CI01000168_00690840_00697335.mRNA mRNA downstream 52369 690621 ~ 697611 (-) True CI01000168_00690840_00697335
CI01000168_00564344_00586248.mRNA mRNA downstream 163732 563360 ~ 586248 (-) True CI01000168_00564344_00586248
CI01000168_00464899_00511499.mRNA mRNA downstream 238017 464871 ~ 511963 (-) False CI01000168_00464899_00511499
CI01000168_00260896_00262695.mRNA mRNA downstream 487276 260861 ~ 262704 (-) True CI01000168_00260896_00262695
CI01000168_00179369_00184905.mRNA mRNA downstream 565075 178605 ~ 184905 (-) True CI01000168_00179369_00184905
CI01000168_00789765_00794770.mRNA mRNA upstream 38941 789143 ~ 794770 (-) True CI01000168_00789765_00794770
CI01000168_00807511_00815389.mRNA mRNA upstream 57270 807472 ~ 815389 (-) False CI01000168_00807511_00815389
CI01000168_00824417_00835917.mRNA mRNA upstream 73526 823728 ~ 835917 (-) True CI01000168_00824417_00835917
CI01000168_00869412_00895047.mRNA mRNA upstream 119123 869325 ~ 895047 (-) True CI01000168_00869412_00895047
CI01000168_00934568_00949104.mRNA mRNA upstream 184028 934230 ~ 949104 (-) True CI01000168_00934568_00949104
TU423608 other upstream 64637 818571 ~ 822021 (-) True G370953

Expression Profile