RNA id: CI01000185_00015550_00020227.mRNA


Basic Information

Item Value
RNA id CI01000185_00015550_00020227.mRNA
length 1852
RNA type mRNA
GC content 0.55
exon number 7
gene id CI01000185_00015550_00020227
representative True

Chromosome Information

Item Value
chromosome id CI01000185
NCBI id null
chromosome length 228139
location 15126 ~ 20227 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGCTCATCATGTCGTCTCATCCGCGTCGTGTCCGGCTCAAGCCCTGGCTGGTGTCTCAGGTGGACAACGGGACGTTTCCCGGTCTGGTCTGGCTGGACCGCGAGGCCAAACGCTTCCAGATCCCATGGAAACACGCCACGCGTCACACGCCCCAGCAGGAAGAGGAAAACACCATCTTTAAGGCCTGGGCCGTGGAGACCGGGAAGTATCAGGAAGGAGTGGACGAGCCGGATCCGGCCAAATGGAAAGCTCAGCTGAGATGTGCTCTGAACAAGAGCCGCGAGTTCAACCTCATCTATGACGGGACCAAAGAGGTTCCCATGAACCCGCTGAAGATCTACGACGTGTGTGATATTCCTCAAACGCTCAGTAACCCAGGTTCAGTGACCACGTATGAGACTGACGGCGATGAAGACGATGTTCCCGACACTCCTGAACCTCCTCCGCCATATCCACCTCACGGGATGAGCTCCTCGCCGCTGGCTCCGGTTTGGACTCCTCCGGGCTCCGTGTCTCCGATGCAGCCGGCCAGCTGCCCTCCTCCCCCTCCCCCCGCGGAGGTGTGGCCTAAGAAAGAGCCGCTGGACGTGGAGATGCAGCCGCCGCCCATGGAGCTCCAGACGCCCACAGCCTTCGACGGCATGTTCGCCACCCCAGAGACCTGGATCAGCTCTCTGCCCATGACAGATCTGGAGGTTCAGTTTTATTACCGCGGTAAGGAGGTGTGTCCGCCGGTAATCGTGAGCAACCCGCAGGGCTGCCGGCTGTTCTACGGCGATCTGGGGCCGATTGTCAATCAGGAGGAGCTGTTCGGGCCAATCAGTCTGGAGCAGGTGCGCTTCCCCTCCACCGAACACATCACCAACGACAAGCAGCGTGTCTTCACCAGCCGCCTGCTGGACGTGATGGACCGCGGCCTCATTCTGGAGGTGAGCGGACACGACATCTACGCCGTGCGGCTGTGCCAGTGTAAAGTGTACTGGTCCGGCCCCTGTGCGCCCAACCCCAACACGCCCAACCTCATCGAGCGCCAGCACAAGGTCAAGCTCTTCTGCCTGGAGTCCTTCCTCAGCGGGGTCATCACTCACCAGAGGGGTCAGTCCTCTTCTGAGCCCCCTCTCTATGACATTCACCTGTGTTTCGGGGAGGAGTGGCCCGACGGCAGACCCAGAGAGAGGAAACTTATCATGGTGCAGGTGGTCCCGGTGGTGGCGCGCATGATCAGCGAGATGTTTTCGGGCGACTGCACGCGCTCGTTCGACAGCGGAAGCGTGCGCCTGCAGATCTCCATCCCAGACATCAAAGACAACATCGTCACACACCTCAAGCAGCTCTACCGGCTGCTGCAGACACATCAGGGGCAGGAGAACTGGCCCCTGCCGCCTGGGGCCGCCCTCCACCTCCCGCAGGCCCTGCAGACGCAGTGACCCGCTCCCACCCGTCCGTGTTTTTAATGAGAAGTACTTAAGACGCTTTAGAGACTCTGAAACTGTAGTGTTTCAGTGCTCTTCTTTTAGTGTGTAAATGTCGCTGGGTCAAAGTCTAGCGTGTTAATGATCAGCCACACTGAACGTCCGCCCAGATATTTAGACAGATGTACGTAGATGTTCTTTTATCAGAGGGAACTAACATTTGCTTATCGCTTCAGTTTCACATATATAATGAGCTTTTAACCATGTTATTGTGTTTTTATTGCTGACGTATGTTACGCTTATAATCAAAATGTCAGGTTTATGTGGTTTTTCGCACTTGTGGGGTTGAATATCATCTAGTTTTTTTTAACCATATTATGTATTTGACATCCCATCATGTAGATTTGTGTAATAATGTTACTTGGATTTATCAAATAAA

Function

GO:

id name namespace
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K10154 IRF6; interferon regulatory factor 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU432093 lncRNA upstream 5736 25963 ~ 60834 (-) True G378069
TU432098 lncRNA upstream 15658 35885 ~ 52802 (-) False G378074
TU432099 lncRNA upstream 15658 35885 ~ 52802 (-) True G378074
TU432113 lncRNA upstream 39650 59877 ~ 95290 (-) True G378081
TU432121 lncRNA upstream 70384 90611 ~ 94556 (-) True G378086
CI01000185_00004801_00013583.mRNA mRNA downstream 1543 4574 ~ 13583 (-) True CI01000185_00004801_00013583
CI01000185_00107906_00156757.mRNA mRNA upstream 87429 107656 ~ 157424 (-) False CI01000185_00107906_00156757
CI01000185_00193329_00212613.mRNA mRNA upstream 171466 191693 ~ 215393 (-) True CI01000185_00193329_00212613
TU432101 other upstream 126922 147149 ~ 169662 (-) True G378075

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00039773 True 2746 mRNA 0.51 8 NC_007133.7 1170295 ~ 1182165 (+)
bowfin (Amia calva) AMCG00013857 True 3269 mRNA 0.50 8 CM030125.1 45639830 ~ 45647135 (-)