RNA id: CI01000189_00831218_00832634.mRNA


Basic Information

Item Value
RNA id CI01000189_00831218_00832634.mRNA
length 2897
RNA type mRNA
GC content 0.40
exon number 2
gene id CI01000189_00831218_00832634
representative True

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 831001 ~ 835086 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGATCTACCCCCTCATTCTTTTTGAGAGACCTCCTTTTTTTCTTTTCTTTTTTTTTGTTGCTTAATCCATGAGCATCTACCTAACAACAGTTTTGTTGCCATTTATTGCCATTTACAGAAACACCAGTTCAGCATCCCGCCACCCACTCAGAATTCAAAGACCTCAAGATAAGAATCACAAAACCACAGAAAGAGAGATTTCTTGAAAATACAGTTGTAAAATTTATTACAATCTATTTTGCCAATATTTTGCACCAAAACTCCTCTACCTATAATGAAAACCAAATTTGTTGCATATATTAAAGGGTGGTTGATTATGATTCCACTTTTTTAACTTTAGTTAGTGTGTAATGTTGCTGTTTGAGCATAAACAACATGCAAAGTTTCAAGGTCAGTACAAAGGGAGATATTTTCTTTTATAGAAATTGCTTTTTAAATACTACAACAAACAGCTGGTAGGAAATACAACGAGCTTCTTCCCGGGTTAGTGACATCACTAACTCTAAAATTTACATAAACCCTGCCCCTGAGAACACACAACAAAGGGGGTGAGGCCATGTTGGGATGCTTTAGAGAAGAGGAAGAGTTGTTGTAGTAGAGTGTTGTTACCATGCCCTCATTTTAAGCCGGACTGCTTCACAAACGAGGGTCAATTCAACGCTAGAATTGCACAAAAAAATAACATGACGGCACATGCTAGTCGATGAGTTGAATCAACTCCACAACAACTACATAAATTTATCCACTAACCATTCAGAAATGTCCAGTTGCATTCTAAAAGGTGTAACTTCTTCCTGAGTCTCTCCATCAGTGTCGACTCCGGTTTGAACAATGTAAGGTTGAACACTGTTACTGACAATCGTCATTTTGGCTGCGTGAGATTCTCCAGCTTTGTTGTTGTTGAGCAACCGAAGCGCGAGCTGTTAAAGCTCCGCCCTCTTCTGGAAAGGGGGCCAGGAACAGCAGCTCATTTGCATTTAAATGGACACACACAGAAATGGCGTGTTTTTGCTCACACCCAAATAGGGGTAAATTTGACAAGCTATAATAAATGATCTGTGGGGTATTATGAGCTGAAATTTCACAGATACATTCTGCGGACACCAGAGACTTATATTTCATCTTGTAAAAGGGGCATTATAGGTCCCCTTTAATATTTGCTGAGAAAAGGCCAAACATTAAAAAAATGTACATTACATGACAAAAAAAAGTGATAGACTTCACTGAATCTGTATGGAAATCTGACCAGAACAGAAGTATTCAACAGTGTATCTCTAGGTATTTAACTATCAGTATCCGTTTCACGGCTTACATGAACCAGTGATTTCCTCCTCAGGTTTTATTTTAGCACTGCTGCTGTTGCCTGCCTGCATTTGGTAATTATATCTAATTTGCAAGGCGATTTCAAAGCCTCTTTTTCTAACCTTAACACCTCAGGTGACACCAAACCTACTCCTCTGCTTAGATAAGAGGCTGCAATTTTAAAAGTGAAAATAATAAGCAAAAATGCCCACTTTTTGTCTTTGATTCATCCCTCCAGTTTGAGAATATATGATGTAATGTTTATTTACTTTCAAAAAACTTAATAATTCAACATCTTTTACAAATGTTCTTGATGCAATTTTTACACAATACATGCGTGTATGTAGGCCTATGTATTTACATATGTATGTATATCCATCCATAGTTAAAATGTGGTTGAATTGAACCTGTCGATGAGTATCTGTAATTCAAACACAGAGAAAAGAAAGGCCACACTTGCAGACATTACAGCTACAAATCTTGAGCTTATGGGATTCTGTGGATCACTGGTGGTCTATGTGTTATCCTTGTTTAATATTTTAATACAAGGAATATATTTGGAGTGAAGGTTAAGCATAGCATCAGTACATGCCTACATACAGTGATTTTAAAGTTTGAAATATGACCTAAATTGACAGTTTCGTGTTATACTGCTTTTTAATGGCACCATCTTGAATTAAACGAGGAATTCAATGTTTAAGGAAGGCAAAGCATCCTTTCTCTGACAGGGTTTAAAGGCAGTGTCTTTATTGTGACACTTGTCACTGAATAAAGCCGCCACTGAAATGGAAGGGAATAATGCAAGTATTTACATGCACAGAAATAGCAATAATCATGATGAATGGATTCCAGATGCTAATTTTAATGTATGCAGCCGCGCTCCTCTACGACAGTACACAGATGCTCAGTTTTGCTATGCCGGCAGACGTAGTGAAGGGGGTGCTGGAAGCTCATTTGCATGCCGAACTGCTATCTTAATGTGGATATTTATTTTAATTCAATTTCTTACCCGCACATACCGCACGGGAGGCTTTTGTGGCAAAGTCACATTAACCTCTGGCTAGTTAATATTCATCTGGCGAAGTCCCCCAGCACTTGATGAATATTCATGAGGTGGGCGCGGCTGTCCCCTCACTCCTCCCCCGGCTCCATGGCGCCCGCGCAGATATGTTTATTTCTGCAAGCGAGAACGCACGCGGCCATCATCATCCTCATCTTCCTGCAGCTCGATCTGCGCGTGACAGTCGCTCAGCTCAATATGGCAAACAAGAACGTTTTACCCGCCAAAGAGCGCTCACTGAAGGGCAGGGAGGAGAAAATGGTCGTGGCAGGCTGGGATGCTCTGATGAGAAGCAGCATTAAAACTGTTCAGAACTAAACATTTAGTGTGCTAGTGAAGCCCACATTCACTTCTTTTACATGTTTGTTACTCTGCTATGGTTAGATGAAAAGGGTCATAAAAAATGCATCACTCCTTGGCTTACTTGGCAGGACTGAGTTCTTGTCTTGTTAGAGTAAAACTCGGCACAGTTGACTACTAGGCACTCTCTGCCCTTATTCCAAAAATGGTTGTGGAGTTCCCTACTGTAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU434593 lncRNA downstream 57484 773205 ~ 773517 (-) True G380147
TU434587 lncRNA downstream 62292 768482 ~ 768709 (-) True G380144
TU434585 lncRNA downstream 64676 766019 ~ 766325 (-) True G380142
TU434368 lncRNA downstream 129808 693692 ~ 701193 (-) True G379936
TU434362 lncRNA downstream 148172 682502 ~ 682829 (-) True G379930
TU434633 lncRNA upstream 59134 894220 ~ 898440 (-) False G380177
TU434634 lncRNA upstream 59134 894220 ~ 898440 (-) False G380177
TU434637 lncRNA upstream 59134 894220 ~ 898517 (-) False G380177
TU434649 lncRNA upstream 96364 931450 ~ 931696 (-) True G380185
TU434666 lncRNA upstream 140752 975838 ~ 976063 (-) True G380202
CI01000189_00797964_00824109.mRNA mRNA downstream 6892 796650 ~ 824109 (-) True CI01000189_00797964_00824109
CI01000189_00764790_00765233.mRNA mRNA downstream 65225 764674 ~ 765776 (-) False CI01000189_00764790_00765233
CI01000189_00744231_00759517.mRNA mRNA downstream 71484 744103 ~ 759517 (-) True CI01000189_00744231_00759517
CI01000189_00703680_00736690.mRNA mRNA downstream 94311 703262 ~ 736690 (-) True CI01000189_00703680_00736690
CI01000189_00557254_00592764.mRNA mRNA downstream 238237 557203 ~ 592764 (-) True CI01000189_00557254_00592764
CI01000189_00859327_00862617.mRNA mRNA upstream 23700 858786 ~ 862617 (-) True CI01000189_00859327_00862617
CI01000189_01256704_01259709.mRNA mRNA upstream 421570 1256656 ~ 1259895 (-) True CI01000189_01256704_01259709
CI01000189_01289557_01297885.mRNA mRNA upstream 454184 1289270 ~ 1297912 (-) True CI01000189_01289557_01297885
CI01000189_01321624_01323067.mRNA mRNA upstream 486361 1321447 ~ 1323388 (-) True CI01000189_01321624_01323067
CI01000189_01342802_01344801.mRNA mRNA upstream 507706 1342792 ~ 1344801 (-) True CI01000189_01342802_01344801
TU434342 other downstream 65624 753257 ~ 764109 (-) True G379912
TU434639 other upstream 59134 894220 ~ 898440 (-) True G380177
TU435899 other upstream 2124022 2959108 ~ 2961667 (-) True G381299
TU435927 other upstream 2163787 2998873 ~ 3006444 (-) True G381317
TU436781 other upstream 2995541 3830627 ~ 3832613 (-) True G382060
TU436773 other upstream 3050476 3885562 ~ 3892909 (-) True G382052

Expression Profile