RNA id: CI01000189_02450025_02461432.mRNA


Basic Information

Item Value
RNA id CI01000189_02450025_02461432.mRNA
length 1656
RNA type mRNA
GC content 0.53
exon number 10
gene id CI01000189_02450025_02461432
representative True

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 2449828 ~ 2461499 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAACAAACAATTATTTACTGTAGAGTGTTTATGTATGTATTACGACAGGATCTAAAACTATTGGGACATGACTGAGTTGGTTGTGCCACATTTCTTTAGAACTCAATTGGCTGCACGCTATGCTAGAGTAGCGATGTTAGCTCTCCTCTTTACAGCCGTGCAGATATACAACCACTCAGACACTCTAGCTAAGGCGGAGGTGGACCCATGTGCAGAATGGAGAGTCGCTCTTAAGGGCTGGGGGGCTGGGTTGCTGCTCTGCAGAATGTCCAGCAAGGACCGCCACATTGAGTCGAGTTGCCCCTCCTACATAAAGACAGAACCTTCCAGCCCCGCCTCACTGACGGACAGCGTAAATCACCACAGCCCCGGCGGCTCCTCAGACGCCAGCGGTAGCTACAGCTCCACCATGAACGGCCATCAGAACGGTTTGGACTCACCCACTCTTTACGGCCCAACTGGTGCTCTTGGTCCCAGCGGAGCCGGAGCCAAGCGTTACGAGGACTGCTCCAGCACCATCACAGAGGACTCGCAGATTAAATGCGAGTATATGCTGAACTCCATGCCCAAGCGCCTGTGTCTGGTGTGCGGGGACATCGCCTCTGGCTACCACTACGGCGTTGCCTCCTGCGAGGCCTGCAAGGCCTTTTTCAAGAGGACCATTCAAGGAAACATCGAGTACAGCTGCCCCGCCACCAATGAATGTGAGATCACCAAACGCAGAAGGAAGTCCTGCCAAGCCTGCCGCTTCATGAAGTGTCTGACTGTCGGCATGATGCGAGAAGGTCCAGTTCTAACTAACAAGACTGGTTATTATTTAGAGAAACGGCCTGTGAGGCATTTTCTCAGAGCACAGGACCTCTTAGAGACGCAAGTGACGGCCCTTATAGGCTCACTGTGGAGCCACGGGGGTGTGTGGACACAAACGCTCTGGCCCTTTAAGTCACGATCAGGGACATTTGCCTACACGGCCGGTGTCGCTGACAGTTGTCAGTCGATGTTAACTGAGCTGGCTAGCTTTGGTGAGGCCCTGCTTGATAGCGCTAGTGATGTGTATCACAGCACACTCCTTCCTCCCATACTCGCCGCACACTTCAAGGGTTTAGAGCATGTTGCTTCACCTGAAATAACCCTAGGTGGCTCATTCGGGAGTCGCCCAATCTACTGCACCTGCTTAAAAACCCAAACTACTAGCCACAGCACTCCCCTCCAGAGACAGAAAGGTCATCGTCGTGCCTTTTCCACCTCCTCTCCAGCAGCAACAGAAGGCACAGTAGCGCAAATCCCTCCTCGGCTCCTTCCTCGATTCTCCCCTGCCACCACTCTTCCCTCCCCTCCAATCCCTCTGTTCTCCCGTTCCCTGGTTGCTCGCCATCCTCAACTAAATGACATCTTTAGGCATTCGAGTAACCCGCAGAGGATTGGTGGAAGTCCCTGCGTTGAATCGGAGGCAGAATGAGCATTGTGTGTTTGGACCCCAGCCAGGCGGGGGAAGATCTTACATGCTGCTGACTTTGGAGGACTCTTCCCATCCTCCTCCACTCAAGCATTTCCCAGTCTGCCACAGCCACTTGTGGGCAGAGGGACAGCTGGAGGTCTGTGCTCTTTCGTTTTCCATACAGAGCACCAGGGACACTTTGCTGACACTTTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU435425 lncRNA downstream 255314 2194257 ~ 2194514 (-) True G380882
TU435405 lncRNA downstream 297743 2149956 ~ 2152085 (-) True G380863
TU435336 lncRNA downstream 341541 2107024 ~ 2108287 (-) True G380803
TU435334 lncRNA downstream 341624 2107024 ~ 2108204 (-) False G380803
TU435073 lncRNA downstream 639599 1809958 ~ 1810229 (-) True G380572
TU435594 lncRNA upstream 143413 2604912 ~ 2605202 (-) True G381033
TU435596 lncRNA upstream 151129 2612628 ~ 2612875 (-) True G381035
TU435608 lncRNA upstream 189478 2650977 ~ 2651299 (-) True G381047
TU435770 lncRNA upstream 254797 2716296 ~ 2716501 (-) True G381184
TU435771 lncRNA upstream 255861 2717360 ~ 2717845 (-) True G381185
CI01000189_02404459_02433659.mRNA mRNA downstream 16169 2404459 ~ 2433659 (-) True CI01000189_02404459_02433659
CI01000189_02383475_02386489.mRNA mRNA downstream 62705 2382566 ~ 2387123 (-) True CI01000189_02383475_02386489
CI01000189_02167284_02313164.mRNA mRNA downstream 136664 2167284 ~ 2313164 (-) True CI01000189_02167284_02313164
CI01000189_02112135_02130703.mRNA mRNA downstream 318553 2111138 ~ 2131275 (-) True CI01000189_02112135_02130703
CI01000189_02097314_02102754.mRNA mRNA downstream 346963 2096812 ~ 2102865 (-) True CI01000189_02097314_02102754
CI01000189_02469062_02471153.mRNA mRNA upstream 7115 2468614 ~ 2471153 (-) True CI01000189_02469062_02471153
CI01000189_02663877_02665709.mRNA mRNA upstream 201590 2663089 ~ 2665790 (-) True CI01000189_02663877_02665709
CI01000189_02686987_02689446.mRNA mRNA upstream 224542 2686041 ~ 2689635 (-) True CI01000189_02686987_02689446
CI01000189_02823407_02846026.mRNA mRNA upstream 361908 2823407 ~ 2846026 (-) True CI01000189_02823407_02846026
CI01000189_02924018_02946613.mRNA mRNA upstream 461802 2923301 ~ 2946613 (-) True CI01000189_02924018_02946613
TU434639 other downstream 1551388 894220 ~ 898440 (-) True G380177
TU434342 other downstream 1684451 753257 ~ 764109 (-) True G379912
TU435899 other upstream 497609 2959108 ~ 2961667 (-) True G381299
TU435927 other upstream 537374 2998873 ~ 3006444 (-) True G381317
TU436781 other upstream 1369128 3830627 ~ 3832613 (-) True G382060
TU436773 other upstream 1424063 3885562 ~ 3892909 (-) True G382052
TU436879 other upstream 1684091 4145590 ~ 4146084 (-) True G382153

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00003670 True 546 mRNA 0.56 2 CM030121.1 14009471 ~ 14013046 (+)