RNA id: CI01000189_03097932_03102218.mRNA


Basic Information

Item Value
RNA id CI01000189_03097932_03102218.mRNA
length 2116
RNA type mRNA
GC content 0.48
exon number 2
gene id CI01000189_03097932_03102218
representative True

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 3097682 ~ 3102815 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGACTACTCTTTCTGAAAATTAATTTTACTGTTAGCATTTTAAAGTAGGCTACTGTGTTGCAATTTAAACATCGCATTAACAGCATTTGAGGTCTTTTCAACAGTAGATGGCAGTGCGCGCGCATTAAATGGGGACGATTGTGCAAAAGATGGTACAGCATGAAAACAAACTTCAAACTTTTTTGAACTCCAATTCGTCTATTTATGTTATTATTCTTATTTAGAAGAAGAGTATTTGTCAATGTTATATAAAAAACCAATACAATTTTACTAAGAAAATTCTTAGCAAAACAGAATAAGTAGACACCTTTCATTGTTTATTATTAGTTAAGCTCATTCGGTTTAGCATAATTTATTTATATTAAATTGGCATTCTGGCAATAATATTAGTCCACTGACAATGGTATTGGGGATTTGAAAAAAACGTTACCGCTTCGAAATATCTTTCCAACGGGGGGCGCTCTTTGAATACTAAGCAACAGGCATTCAGTGTTACTCACATTCAAGATATTAACGCTATCTAAAGAGCAAAGGGGAGTTTCCAAAGTCATCAAGTCCATCCAACTTTGCCATTTTCGGCCAGAGACCACTGAAAATGACTCCCAAGAAGACTGCCGCTCCCTTCCTATGGTTTTCCTTTTGCTTTGGGAATATTATTGAGGCAGTGGTGCTGGGATCGGTGGAGTACCCCTCTGATAACGGGCTTCACTCACATCTGGATGCGCGCGGTCCTGCAGAAGCCAGCACAAGCTCCCGGAACGACTCCACATCTGTTCATGTTCCGTCTTACATGATCTCTCTGTACAGGACTCTATCAGAACTGGACCGACGGGGAGGCAACGGCAGCCAGACGCGCTCCAGGAGATATGCCAATACAGTGACCAGCTTCATGGACCTGGGACAAGACGAGCCTTCCCTAAAGTTCCATCAGCAGTACACATTCGACCTGTCTGGTCTCTCAAGACTGGACGAACTGATGGAGGTGGAGCTGCGGGTTCTGAGGAGGCCACCGCCTGATGTCTTAAGTTTACTCTCCCGTGGTGGGAACCTGTACCGACTTCTCCTTCACACCTGCTCCCTCCCGGGATCCTCTCACAAACCTCTGCTCCTCACCTCCAGGACCATTGATCTTCTAGATACCGCTTCAGCCACATGGGATGTGTCTGACGTCGGTGCAAGCGTGAAGACCCACCTGAAGTTGCACAGGACCGTGGAAGGCAGCAGGCCGTTGTGTTTCAGCATATCCGCCGTTTCTGATTCAAATAACGAGGTCGTGCATCCCGGGATGCTGGGTCTGAGCCACGAGGATCAGCAGACCCATGAAAGAGCCTTACTGGTAGCCTTTTCTCGAGCTCGGAGGAAGGAGAACCTCTTTAGGGAGATCCGTGAGAAGATAAGGGCCATGAAAAGTCGTAAATTTCCTGCACCGGAGCATGATATTAAAAGTCATCCAAGACATCGGCGGAGGAGACGGACAGCACTAGCAGGTCGTCCTGGTGTAGGACCTGGTACTGGCGGCGGCGGAGGAAAGGGAGGTGGCAGACGGAGAACACGTTGCAGCCGGAAGCCGCTTCACGTGAACTTCAAAGAACTGGGTTGGGACGACTGGATTATTGCGCCACTAGATTATGAAGCTTATCACTGTGAGGGTTTGTGTGACTTCCCGTTGCGCTCACACCTGGAACCGACCAACCACGCCATCATCCAGACTCTCATGAACTCCATGGACCCAGAGTCCACCCCTCCAAGCTGTTGTGTTCCTTCTAAACTCAGTCCCATAAGCATCCTGTACATTGACTCGGGGAATAATGTAGTTTATAAACAGTATGAGGACATGGTGGTGGAGAGTTGTGGTTGCAGGTAGCAATGTGAGCGAGGGGTGAGCTACCCCTGGACCCTATCCGAAAGCTGCCGCTGCCTCATACGCAGAGGCCAAGCACTGCATTGTCGGCAAGATGAAGCAGTCAGAGCTGGTGAGAGGGACAGTGTGTAAATGTGTGACAACGAGCATGTGTGTATGTTCAGATGGTGATAAGACATTGAGTTGTGTTTTAGAAGCGAGCAGAGGACATGTGTGCTGAACAGCTCCAAATTCCCTTACAACACCAAATAAA

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG:

id description
K20013 GDF7; growth differentiation factor 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU436598 lncRNA downstream 4247 3093137 ~ 3093435 (-) True G381902
TU436577 lncRNA downstream 5369 3090800 ~ 3092313 (-) True G381887
TU436591 lncRNA downstream 7626 3089654 ~ 3090056 (-) False G381901
TU436597 lncRNA downstream 7626 3089723 ~ 3090056 (-) True G381901
TU436592 lncRNA downstream 7679 3089654 ~ 3090003 (-) False G381901
TU436610 lncRNA upstream 138466 3241281 ~ 3241515 (-) True G381914
TU436614 lncRNA upstream 160939 3263754 ~ 3264236 (-) True G381918
TU436631 lncRNA upstream 257024 3359839 ~ 3360241 (-) True G381931
TU436545 lncRNA upstream 262499 3365314 ~ 3366132 (-) True G381855
TU436651 lncRNA upstream 371409 3474224 ~ 3474437 (-) True G381951
CI01000189_02986636_02986941.mRNA mRNA downstream 110741 2986548 ~ 2986941 (-) True CI01000189_02986636_02986941
CI01000189_02961166_02963382.mRNA mRNA downstream 134300 2960570 ~ 2963382 (-) False CI01000189_02961166_02963382
CI01000189_02924018_02946613.mRNA mRNA downstream 151069 2923301 ~ 2946613 (-) True CI01000189_02924018_02946613
CI01000189_02823407_02846026.mRNA mRNA downstream 251656 2823407 ~ 2846026 (-) True CI01000189_02823407_02846026
CI01000189_02686987_02689446.mRNA mRNA downstream 408047 2686041 ~ 2689635 (-) True CI01000189_02686987_02689446
CI01000189_03114741_03118058.mRNA mRNA upstream 11136 3113951 ~ 3118058 (-) True CI01000189_03114741_03118058
CI01000189_03126316_03126839.mRNA mRNA upstream 23297 3126112 ~ 3126999 (-) True CI01000189_03126316_03126839
CI01000189_03130245_03141782.mRNA mRNA upstream 26608 3129423 ~ 3141782 (-) True CI01000189_03130245_03141782
CI01000189_03165381_03189571.mRNA mRNA upstream 61651 3164466 ~ 3189571 (-) True CI01000189_03165381_03189571
CI01000189_03231665_03237461.mRNA mRNA upstream 127975 3230790 ~ 3239196 (-) True CI01000189_03231665_03237461
TU435927 other downstream 91238 2998873 ~ 3006444 (-) True G381317
TU435899 other downstream 134228 2959108 ~ 2961667 (-) True G381299
TU434639 other downstream 2199242 894220 ~ 898440 (-) True G380177
TU434342 other downstream 2332305 753257 ~ 764109 (-) True G379912
TU436781 other upstream 727812 3830627 ~ 3832613 (-) True G382060
TU436773 other upstream 782747 3885562 ~ 3892909 (-) True G382052
TU436879 other upstream 1042775 4145590 ~ 4146084 (-) True G382153

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00024021 True 1189 mRNA 0.52 2 NC_007128.7 30835076 ~ 30839338 (-)
bowfin (Amia calva) AMCG00004115 True 3719 mRNA 0.39 2 CM030121.1 33905291 ~ 33912885 (+)