RNA id: CI01000189_03126316_03126839.mRNA


Basic Information

Item Value
RNA id CI01000189_03126316_03126839.mRNA
length 661
RNA type mRNA
GC content 0.34
exon number 2
gene id CI01000189_03126316_03126839
representative True

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 3126112 ~ 3126999 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTTAATATTTAATACATCAAGAATTTTTTTTTTTACAGCAAACATGACTTGCAGGTAAAATTTTGATCATTCGAATTGTATTTAAATGTTTATGAACATTATACAGGGCAAAACCAATCGGAAGCACCAGTGATGCAGAGTCATTTGACTTTGACAGAATGAAACAGGTTAGTTCAGAAAACCATTCAGAATATACTATTATTGTGCAAGAAATGAGGATGGACTGGTCTGCTAACTATTATAAAATCTGTTGTGTCCAAAAGGAGATCTTGGAGGAGGTTGTGCGAGAATTGCAGAAAGTAAAAGAAGAAATCATTGATGCATGTCTGCAATGGTACGGAAAATTCAGTTGCAGAAATGTTGTGCAGAAACAAGGAATTACTGAGAAGGACAAGGGAAAGCTGAGAAACAGAAGGAATTGGAGTGATGGATTGAGTGAGTGTGTGTATGGATGAGCAGATGGAAATATAGACCTTCACACTGAATTTTCTATTTCCTCCAGTATGAACGTTGAGACAGTCCACTGTGCAGCTTGCTGCTCTCGCTCTTTCAAGTCTTAAAGTCAACAAGTTGGAAATTAATGAAGATATTTTTGTTTTCTAAGTTTATATTGTTTCATCGGTCATTGTTATTATTGTTAAGAATTGTATTATATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU436598 lncRNA downstream 32677 3093137 ~ 3093435 (-) True G381902
TU436577 lncRNA downstream 33799 3090800 ~ 3092313 (-) True G381887
TU436597 lncRNA downstream 36056 3089723 ~ 3090056 (-) True G381901
TU436595 lncRNA downstream 36109 3089723 ~ 3090003 (-) False G381901
TU436594 lncRNA downstream 36159 3089723 ~ 3089953 (-) False G381901
TU436610 lncRNA upstream 114282 3241281 ~ 3241515 (-) True G381914
TU436614 lncRNA upstream 136755 3263754 ~ 3264236 (-) True G381918
TU436631 lncRNA upstream 232840 3359839 ~ 3360241 (-) True G381931
TU436545 lncRNA upstream 238315 3365314 ~ 3366132 (-) True G381855
TU436651 lncRNA upstream 347225 3474224 ~ 3474437 (-) True G381951
CI01000189_03114741_03118058.mRNA mRNA downstream 8054 3113951 ~ 3118058 (-) True CI01000189_03114741_03118058
CI01000189_03097932_03102218.mRNA mRNA downstream 23297 3097682 ~ 3102815 (-) True CI01000189_03097932_03102218
CI01000189_02986636_02986941.mRNA mRNA downstream 139171 2986548 ~ 2986941 (-) True CI01000189_02986636_02986941
CI01000189_02961166_02963382.mRNA mRNA downstream 162730 2960570 ~ 2963382 (-) False CI01000189_02961166_02963382
CI01000189_02924018_02946613.mRNA mRNA downstream 179499 2923301 ~ 2946613 (-) True CI01000189_02924018_02946613
CI01000189_03130245_03141782.mRNA mRNA upstream 2424 3129423 ~ 3141782 (-) True CI01000189_03130245_03141782
CI01000189_03165381_03189571.mRNA mRNA upstream 37467 3164466 ~ 3189571 (-) True CI01000189_03165381_03189571
CI01000189_03231665_03237461.mRNA mRNA upstream 103791 3230790 ~ 3239196 (-) True CI01000189_03231665_03237461
CI01000189_03255223_03258558.mRNA mRNA upstream 127943 3254942 ~ 3258558 (-) True CI01000189_03255223_03258558
CI01000189_03259755_03261745.mRNA mRNA upstream 132358 3259357 ~ 3261745 (-) True CI01000189_03259755_03261745
TU435927 other downstream 119668 2998873 ~ 3006444 (-) True G381317
TU435899 other downstream 162658 2959108 ~ 2961667 (-) True G381299
TU434639 other downstream 2227672 894220 ~ 898440 (-) True G380177
TU434342 other downstream 2360735 753257 ~ 764109 (-) True G379912
TU436781 other upstream 703628 3830627 ~ 3832613 (-) True G382060
TU436773 other upstream 758563 3885562 ~ 3892909 (-) True G382052
TU436879 other upstream 1018591 4145590 ~ 4146084 (-) True G382153

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00024025 False 912 processed_transcript 0.40 3 NC_007128.7 30900772 ~ 30901872 (-)