RNA id: CI01000189_03255223_03258558.mRNA


Basic Information

Item Value
RNA id CI01000189_03255223_03258558.mRNA
length 1844
RNA type mRNA
GC content 0.45
exon number 3
gene id CI01000189_03255223_03258558
representative True

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 3254942 ~ 3258558 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGAGACTAAAGGGGCCACCGTGGAAGAAGACAGCTGTGATACGGACAGCACTGTTAGACCGAACTGCGGTAAACGTAAAAACGAGGAGACCGATGAGACAGCAAGACAAGGCAGAGGAAAGAAGCGAAAGAGGGGTGGAAAACAGTTGCGTCCCGGAGAGCGGTACGTGCCTCCTCCACAGAAACGCAACCCAGGTGTGAGTTTCAGCCAAGAACATTTTGCGGAAACATCCTACTATTTTGAAGGCGGTCTTCGCAAAGTGCATCCTTATTATTTTGATTTTAAGACGTACTGTAAGGGACGTTGGGTTGGTAAAACTCTATTAGACGTTTTCAAGAGTGAATTTCGTGCGGAGTCTTTGGACTACTACAATAAGGCTGTCAAAGAGGGGCGGATTAAACTGAATGAAACGCCCGTGGATGACCTGAATATAACACTAAAGAACAATGACTTTTTGAGGAACACAGTGCATCGTCATGAGCCCCCTGTGAGCGCGCAGCCCTTAGAGGTTTTGGTGGATGATGGTGAAGTGGTGGTTGTGGATAAACCCGCCTCACTTCCTGTGCATCCCTGTGGGCGCTACCGTCACAATACTGTCATCTTCATTCTGGGGAAGGAGAAAGGTCTTAGTGGCCTCCACACAGTACATCGACTGGACCGCCTCACCTCAGGTGTGCTGCTGTTTGCTCGTACACTCGAGGTTTCCAAAAAACTAGACGAAATGGTTCGTGAGAGACAGTTAGAAAAGGAATATGTGTGTCGTGTGGACGGGGAGTTTCCAGAGGGTGAGGTGGTGTGTGAGGAACCCATCCTGGTAGTGTCCTTCCGGGTGGGCCTTTGTAGAGTGCATCCCAAAGGCAAAGAATCCCGCACAGTGTTCCAGAGACTGAGCTATAACGGACGCTCTAGTGTGGTCCGCTGTATGCCTCTCACAGGACGTACTCACCAGATTCGTGTTCATCTTCAGTTCCTTGGCTTCCCAATCCTCAACGATCCCATATATGGGTCTTCTGCATGGGGTCCGAATAGAGCCAAAGGAGGGCTGGTGGGTATGAGTGATGAGGAGCTTCTAGAAGCTCTTATAGAAGAACATCGTTCAAAGGAGAGTCTGCACTTGTTGGATTTGCCTGATGAAGAGGTCTCAGGAAAACATGGGCTGAAGACAGAGTGTAAGGTTGGTGCTCAAGAACACAGTGACCAAATAACAGTGCTTGAGTCAAGCAGTGGTGCATGTGATGACAGTTCCTGTAAAGTGCCTCTGGGTAAAGCGGAGGCAGAACACAGCCAAGAACTTCACAAGAGCACATCTGCAGTTGAGTCTGAGGGCGAGATGAACGGTGCTCAAAAAGAAAAAAATTCTATCTCAGATGAAGCCCCCAGAACTGCAAGATCAAATTCTTTTGTCAGAGATAATTTATGTGGCGAATGTAAAATTGTGCGCCCTGACCCAACAGAGAAGGATTTGATAATGTATCTACATGCATTACGCTACAAAGGACCTGACTTTGAGTACTCAACCCAACTGCCTGACTGGGCCAAAGAAGACTGGCTTCAGGATTAAACTAAAATCTGATGTATTCATGCAACATTTGTTACCTGATACTACTGCACATGAGTTTACAAGGATTGGGTTAAAAAAAAAAAAAAAAACACATTACTGAATATATATATATATATATATACAGTGTGAATTCAGAATGACTCCTTTTTAAGTTCTTTTAATTTAAATTGGTGAATTTATTAGTCTGTACAGCGGTGCATCTCTGTGTTTTGTCTCAATTTTTTTTCAATTCCTTGTATTTCAAAAGGACATTTCATCTGACATTAACATACAGCAATAAA

Function

GO:

id name namespace
GO:0031119 tRNA pseudouridine synthesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU436610 lncRNA downstream 13427 3241281 ~ 3241515 (-) True G381914
TU436598 lncRNA downstream 161507 3093137 ~ 3093435 (-) True G381902
TU436577 lncRNA downstream 162629 3090800 ~ 3092313 (-) True G381887
TU436597 lncRNA downstream 164886 3089723 ~ 3090056 (-) True G381901
TU436595 lncRNA downstream 164939 3089723 ~ 3090003 (-) False G381901
TU436614 lncRNA upstream 5196 3263754 ~ 3264236 (-) True G381918
TU436631 lncRNA upstream 101281 3359839 ~ 3360241 (-) True G381931
TU436545 lncRNA upstream 106756 3365314 ~ 3366132 (-) True G381855
TU436651 lncRNA upstream 215666 3474224 ~ 3474437 (-) True G381951
TU436661 lncRNA upstream 231860 3490418 ~ 3490630 (-) True G381961
CI01000189_03231665_03237461.mRNA mRNA downstream 15746 3230790 ~ 3239196 (-) True CI01000189_03231665_03237461
CI01000189_03165381_03189571.mRNA mRNA downstream 65371 3164466 ~ 3189571 (-) True CI01000189_03165381_03189571
CI01000189_03130245_03141782.mRNA mRNA downstream 113160 3129423 ~ 3141782 (-) True CI01000189_03130245_03141782
CI01000189_03126316_03126839.mRNA mRNA downstream 127943 3126112 ~ 3126999 (-) True CI01000189_03126316_03126839
CI01000189_03114741_03118058.mRNA mRNA downstream 136884 3113951 ~ 3118058 (-) True CI01000189_03114741_03118058
CI01000189_03259755_03261745.mRNA mRNA upstream 799 3259357 ~ 3261745 (-) True CI01000189_03259755_03261745
CI01000189_03294767_03307517.mRNA mRNA upstream 35791 3294349 ~ 3307855 (-) True CI01000189_03294767_03307517
CI01000189_03335757_03343285.mRNA mRNA upstream 76815 3335373 ~ 3343285 (-) True CI01000189_03335757_03343285
CI01000189_03367583_03403144.mRNA mRNA upstream 108227 3366785 ~ 3403144 (-) True CI01000189_03367583_03403144
CI01000189_03455342_03475831.mRNA mRNA upstream 196673 3455231 ~ 3475831 (-) True CI01000189_03455342_03475831
TU435927 other downstream 248498 2998873 ~ 3006444 (-) True G381317
TU435899 other downstream 291488 2959108 ~ 2961667 (-) True G381299
TU434639 other downstream 2356502 894220 ~ 898440 (-) True G380177
TU434342 other downstream 2489565 753257 ~ 764109 (-) True G379912
TU436781 other upstream 572069 3830627 ~ 3832613 (-) True G382060
TU436773 other upstream 627004 3885562 ~ 3892909 (-) True G382052
TU436879 other upstream 887032 4145590 ~ 4146084 (-) True G382153

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00024045 True 1995 mRNA 0.48 3 NC_007128.7 31205064 ~ 31212420 (-)