RNA id: CI01000189_03335757_03343285.mRNA


Basic Information

Item Value
RNA id CI01000189_03335757_03343285.mRNA
length 1698
RNA type mRNA
GC content 0.45
exon number 12
gene id CI01000189_03335757_03343285
representative True

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 3335373 ~ 3343285 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTTTTGAGGTGGTTGTCATAGAGTTGGGCTGTAGTTTGTACTTCGTCGCTTCCTTATCCTGCAGTAACTACAAAATGTTTGCTGCCAGAAGAGCGTTGCGTCTTTGTCAAAGAGTGGCAAATGTTTGTGTTTCGCGACGCGGATGCGCTGGAGCTGTTCCAGTGGACGACATCGTGAACGGTCTAACCGAGGAGCAGATCCAGCTCAGACAGACAGTCCAGAGATTCTGCCAGGAGAAGCTCAGTCCATACGCTGATGAGATTGACAAGAAAAACGAGTTTCCCCGCATGAGGAAAACCAATGGTTTTAATCTTTTTTTATCCATGTGTGCAGTGGAGTACGGTGGAACGGGATTGGGCTACCTTGAACATGTGATTGTTATGGAGGAGATCTCCCGTGTTTCAGCAGCTATCGCTCTCAGCTATGGAGCACACTCCAATTTGTGTGTAAATCAGATGGTTCGACATGCAAACCAGAAACAGAAAGAGAAGTACATGCCCAAGCTGATGACGGGCGAGCATGTGGGTGCCTTGGCCATGAGTGAGCCCAACGCTGGCTCTGATGTGGTGTCCATGAAACTGACAGCGAAAAAACAAGGGGATCATTACGTGTTGAACGGTAATAAGTTCTGGATTACGAATGGACCAGATGCAGATGTTCTGATTGTGTATGCTAAGACAAACCCAGAGGCAGAAGCCCGTGGTATCACTGCTTTCATCATAGAGAAGGGCATGCCAGGATTTAGCACAGCGCAGAAGCTGGATAAACTGGGAATGAGAGGATCTAACACCTGTGAACTCGTCTTTGAAGACTGCAAGGTCCCTGAGGAAAACATATTGGGCCCATTAAATAAAGGAGTATATGTTATGATGAGTGGGTTGGACCTAGAGAGACTTGTCCTGGCCTCTGGACCTGTTGGCATCATGCAAGCTGTACTTGACCATGCAATTCCTTATGTTCATGTTCGTGAAGCCTTTGGACAGAAAATTGGCCACTTCCAGCTAATGCAAGGAAAAATGGCTGATATGTACACACGGCTTAGTTCATGTCGACAGTATTTATACAACGTTGCCCGTGCTTGTGACAAAGGCCATTACAGTGCTAAGGACTGTGCTGGGGTAATCCTTTATTGTGCTGAGAATGCGACTCAAGTTGCCTTGGATGGAATTCAGTGCCTTGGTGGAAACGGTTACATTAATGACTACCCAATGGGCCGCTTCTTAAGAGATGCTAAACTTTATGAGATTGGAGCTGGTACCAGTGAGGTCAGAAGGATGATCATTGGCAGAGCCTTCAATGCAATGTTCAAATAAGAGCACCACTTAGCGGATGCGTATCTGATCCCACATGAACTGTGTTGCTTTTAAGACAAAACAGTCATCTGGCTTCTGAATTTTGACACTTCAATTGATGTGAAGCATAATTGCTGATCGGTTTCAAGAGCAGTGATACAAAACTATAATGCATCCTTTGTATGTCTAAAGCTGTTTATATGATTCTGTAACACTACATCAAGTGGTCTCGCATACAAGAACACAAGCAGTAGTAAGAGATTTACCTCTCAGACCCCAAGTCATTTGTCATAGCACAGTTGTCTTGTTTTTTGTCAAAACATGGTCAGTCTTTATAAGCTGGTTTGCATATCATCTCTGCCCCCTAACATGATTGTTTGTGGCTTGGTTTCTTATGTGAATAAA

Function

GO:

id name namespace
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K00253 IVD, ivd; isovaleryl-CoA dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU436614 lncRNA downstream 71137 3263754 ~ 3264236 (-) True G381918
TU436610 lncRNA downstream 93858 3241281 ~ 3241515 (-) True G381914
TU436598 lncRNA downstream 241938 3093137 ~ 3093435 (-) True G381902
TU436577 lncRNA downstream 243060 3090800 ~ 3092313 (-) True G381887
TU436597 lncRNA downstream 245317 3089723 ~ 3090056 (-) True G381901
TU436631 lncRNA upstream 16554 3359839 ~ 3360241 (-) True G381931
TU436545 lncRNA upstream 22029 3365314 ~ 3366132 (-) True G381855
TU436651 lncRNA upstream 130939 3474224 ~ 3474437 (-) True G381951
TU436661 lncRNA upstream 147133 3490418 ~ 3490630 (-) True G381961
TU436557 lncRNA upstream 159333 3502618 ~ 3503965 (-) True G381867
CI01000189_03294767_03307517.mRNA mRNA downstream 27518 3294349 ~ 3307855 (-) True CI01000189_03294767_03307517
CI01000189_03259755_03261745.mRNA mRNA downstream 73628 3259357 ~ 3261745 (-) True CI01000189_03259755_03261745
CI01000189_03255223_03258558.mRNA mRNA downstream 76815 3254942 ~ 3258558 (-) True CI01000189_03255223_03258558
CI01000189_03231665_03237461.mRNA mRNA downstream 96177 3230790 ~ 3239196 (-) True CI01000189_03231665_03237461
CI01000189_03165381_03189571.mRNA mRNA downstream 145802 3164466 ~ 3189571 (-) True CI01000189_03165381_03189571
CI01000189_03367583_03403144.mRNA mRNA upstream 23500 3366785 ~ 3403144 (-) True CI01000189_03367583_03403144
CI01000189_03455342_03475831.mRNA mRNA upstream 111946 3455231 ~ 3475831 (-) True CI01000189_03455342_03475831
CI01000189_03494191_03495519.mRNA mRNA upstream 150361 3493646 ~ 3495519 (-) True CI01000189_03494191_03495519
CI01000189_03506782_03513494.mRNA mRNA upstream 163497 3506782 ~ 3513494 (-) True CI01000189_03506782_03513494
CI01000189_03517928_03524647.mRNA mRNA upstream 173998 3517283 ~ 3524712 (-) True CI01000189_03517928_03524647
TU435927 other downstream 328929 2998873 ~ 3006444 (-) True G381317
TU435899 other downstream 371919 2959108 ~ 2961667 (-) True G381299
TU434639 other downstream 2436933 894220 ~ 898440 (-) True G380177
TU434342 other downstream 2569996 753257 ~ 764109 (-) True G379912
TU436781 other upstream 487342 3830627 ~ 3832613 (-) True G382060
TU436773 other upstream 542277 3885562 ~ 3892909 (-) True G382052
TU436879 other upstream 802305 4145590 ~ 4146084 (-) True G382153

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00024053 False 2140 mRNA 0.43 12 NC_007128.7 31346560 ~ 31360951 (-)
bowfin (Amia calva) AMCG00000351 True 2738 mRNA 0.45 11 CM030141.1 12034131 ~ 12041923 (+)