RNA id: TU433962


Basic Information

Item Value
RNA id TU433962
length 215
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G379599
representative True

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 473810 ~ 474024 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGGAGAGTGTTTTGAAATGTATCCAGATTAATGTAGACATAGTGTTCAAATACTTTTGGGTCTACTTTGTGATAAGATTTATTTAATTTTTCCTACTGCCAGGTCTTTCAAAAATGTGTATTTATCGACCAAAATCCCAAATGCTATGAAAATCCTCTTGTGTCAATCCAGATGAATTGGTCAATCTTTTTATCAGTACCACTTATACCTTGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU433955 lncRNA upstream 13379 459307 ~ 460431 (+) True G379592
TU433911 lncRNA upstream 57762 415750 ~ 416048 (+) True G379561
TU433910 lncRNA upstream 59319 414240 ~ 414491 (+) True G379560
TU433908 lncRNA upstream 65049 408557 ~ 408761 (+) True G379558
TU433907 lncRNA upstream 65499 408073 ~ 408311 (+) True G379557
TU433993 lncRNA downstream 104361 578385 ~ 579319 (+) True G379627
TU433945 lncRNA downstream 142568 616592 ~ 617478 (+) True G379582
TU433926 lncRNA downstream 286522 760546 ~ 764103 (+) True G379570
TU434075 lncRNA downstream 321165 795189 ~ 795509 (+) True G379695
TU434086 lncRNA downstream 368363 842387 ~ 852067 (+) True G379700
CI01000189_00448469_00457564.mRNA mRNA upstream 15625 448469 ~ 458185 (+) True CI01000189_00448469_00457564
CI01000189_00438982_00445216.mRNA mRNA upstream 28165 438982 ~ 445645 (+) True CI01000189_00438982_00445216
CI01000189_00322834_00332685.mRNA mRNA upstream 141060 322834 ~ 332750 (+) True CI01000189_00322834_00332685
CI01000189_00297654_00300990.mRNA mRNA upstream 172352 297654 ~ 301458 (+) True CI01000189_00297654_00300990
CI01000189_00183881_00277704.mRNA mRNA upstream 196106 183881 ~ 277704 (+) True CI01000189_00183881_00277704
CI01000189_00537167_00546397.mRNA mRNA downstream 63143 537167 ~ 547307 (+) True CI01000189_00537167_00546397
CI01000189_00552262_00553370.mRNA mRNA downstream 76809 550833 ~ 553486 (+) True CI01000189_00552262_00553370
CI01000189_00613239_00646678.mRNA mRNA downstream 137575 611599 ~ 646948 (+) True CI01000189_00613239_00646678
CI01000189_00671005_00685458.mRNA mRNA downstream 196981 671005 ~ 686271 (+) True CI01000189_00671005_00685458
CI01000189_00693840_00694391.mRNA mRNA downstream 219677 693701 ~ 695967 (+) True CI01000189_00693840_00694391
TU433965 other downstream 1591 475615 ~ 496908 (+) True G379600
TU434221 other downstream 538522 1012546 ~ 1012903 (+) False G379799
TU434222 other downstream 538522 1012546 ~ 1012834 (+) True G379799
TU434037 other downstream 542007 1016031 ~ 1059385 (+) True CI01000189_00987665_01058757
TU435687 other downstream 2365197 2839221 ~ 2841125 (+) True G381120

Expression Profile