RNA id: TU434510


Basic Information

Item Value
RNA id TU434510
length 351
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G380071
representative True

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 605221 ~ 605571 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCCGGTGATATGGCAGATATTTAGTGGCTCATTTGGTCTGGTGTGCAATAGAGTACCTCAGAGATGACGTGTTTTTGTATGCAAAACCCGGAAGCGAGTTAGCATTTTAGGACTTCCGGTTCCATCGCCCCGAAGTCAATGGGTTTTTTGAATGGGTTTTTGCTAAATCGCCTGAAATAAGGTCTGTGGTTAACAAAGCCTCTAAATATTTTCACGTTTTGATCTATGACATAAAACACACCAGTTATAACCTGCTTGTGATTTTTTTTTTTTTTTTTTTTTAAACCTTTATTGTGTCTTAAAAACGGCGGTTGCTAACAAGTTGCTAAAAGGGACTACTTCCTTTGCCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU434509 lncRNA downstream 1490 603519 ~ 603731 (-) True G380070
TU434501 lncRNA downstream 7779 597120 ~ 597442 (-) True G380066
TU434379 lncRNA downstream 110472 493132 ~ 494749 (-) True G379947
TU434375 lncRNA downstream 301802 291768 ~ 303419 (-) True G379943
TU434336 lncRNA downstream 558018 46880 ~ 47203 (-) True G379907
TU434538 lncRNA upstream 39717 645288 ~ 646111 (-) True G380097
TU434365 lncRNA upstream 72868 678439 ~ 679609 (-) True G379933
TU434362 lncRNA upstream 76931 682502 ~ 682829 (-) True G379930
TU434368 lncRNA upstream 88121 693692 ~ 701193 (-) True G379936
TU434585 lncRNA upstream 160448 766019 ~ 766325 (-) True G380142
CI01000189_00557254_00592764.mRNA mRNA downstream 12457 557203 ~ 592764 (-) True CI01000189_00557254_00592764
CI01000189_00527327_00527614.mRNA mRNA downstream 77559 526280 ~ 527662 (-) True CI01000189_00527327_00527614
CI01000189_00510737_00516326.mRNA mRNA downstream 88886 509758 ~ 516335 (-) True CI01000189_00510737_00516326
CI01000189_00506407_00508897.mRNA mRNA downstream 96324 506355 ~ 508897 (-) True CI01000189_00506407_00508897
CI01000189_00496400_00496746.mRNA mRNA downstream 107873 495915 ~ 497348 (-) True CI01000189_00496400_00496746
CI01000189_00703680_00736690.mRNA mRNA upstream 97691 703262 ~ 736690 (-) True CI01000189_00703680_00736690
CI01000189_00744231_00759517.mRNA mRNA upstream 138532 744103 ~ 759517 (-) True CI01000189_00744231_00759517
CI01000189_00764790_00765233.mRNA mRNA upstream 159103 764674 ~ 765776 (-) False CI01000189_00764790_00765233
CI01000189_00797964_00824109.mRNA mRNA upstream 191079 796650 ~ 824109 (-) True CI01000189_00797964_00824109
CI01000189_00831218_00832634.mRNA mRNA upstream 225430 831001 ~ 835086 (-) True CI01000189_00831218_00832634
TU434342 other upstream 147686 753257 ~ 764109 (-) True G379912
TU434639 other upstream 288649 894220 ~ 898440 (-) True G380177
TU435899 other upstream 2353537 2959108 ~ 2961667 (-) True G381299
TU435927 other upstream 2393302 2998873 ~ 3006444 (-) True G381317
TU436781 other upstream 3225056 3830627 ~ 3832613 (-) True G382060

Expression Profile