RNA id: TU434637



Basic Information


Item Value
RNA id TU434637
length 3804
lncRNA type antisense_over
GC content 0.37
exon number 3
gene id G380177
representative False

Chromosome Information


Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 894220 ~ 898517 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GCCATAAAAGATAGTATGCATTGTGCTGATTGTGAATTATGAAGATGAAATAAAGAAAACAACTAAGCCACAAGAATGCTTGATGATAAAATATACACCAATGTTAATTTTTTATTCTGTATTTTATGTTAACATAGTGTTTCAGAGGGTTTGAAAATAAAAACAATAGCTAAAACCAGTTAGTTAACATATTTGAATTTTCATTAAAATAAAAGTACAATTATGAGGTATTATTGTAGAATCAGTTCACATTCCCTTTTCTCCCATCAGCTCCAGGTCTGTTGCCCTTTACCCATTAAACCAGAGGGTAACTGGATGCGGTAGCAATGCCACATTGGTTGTTCTTGTTCCTGGACATCAAGATGTAGCCATTTTGACCCCAATCCAGACCCCAGCTAAAATCACAGCAGAGTGTTTAGTTGTTTTGTGTTTCTATAATTTTTTTAAAATTCATTTTGTTTCATTGTCTTGTGCTTTTTATTTTCTTAACCTGTTCTTAACAAGCCAGTAGTCCTCTCCATCCTTAGTTCCATAACCAACAGCCAGGACGCCATGATCTAAATCAGAGCTGCTGCAGTCAGGCTCATCGTAGACACCTAGAAACATTAATCATTAAATTAACTTGTCAATTAATTAGCCAGAAAATTTATAATTAAAAGATGGAAAAAAAGTGTTAAAAAATACACCAAAAAATAGGTGATGACAATTACCAGAATCATAGAGCTGAAAGCTGCTGTGTCCAGCATCGATGGCAACAGATACAGGGCCGATTGTAGCAACAGCTTCCTGTAGCGCACTTTCATCCCCACTGGCGACATCGACATATCCTGTGCAAGTGGCGCCTATGGTGCTCGGGTTAAAACGGCACTGACCATCCTGTGTGGAGAATATTGATGAGCAAAAATTATTTAAAAAACTCAGTTGAAGCTTTAGGGTCGAGTTTTTTCTCACAAACATTGTTAGGACTCACCACAGCCTCATACGGGTAGGACTCCTCTGTATCCAGACCTTTATTGGCTTCAATGTACTGGAAGGCCTGGTCCATTAGTCCCCCGCCACAGCCCATGTTCCCATAATCACCAGAACAGTCCACCAGTTGCTGCTCACTCAAGGACACCAGTTTTCCTGTCTTCTTGAATGTCTGACCCTCTAGGGAACCGGTCTGAGAGACAAAAGAGGGATGAATAGCAGCAGAGGCAGAAAAGTAAGAATGAACTGGTATGGCAAGCCGTTTTAGCTTAAAATGTTCCCAGCATTACTTGTCGTAATTGCATTTTTACTAGTAAGAATTCCAATTATAGAGCTCTCTAATTCAATTACAGAGCTCTGCAATTAAACATCTTGGTAACGCTTTACAATAAGGTTTCATTAGTTAACATTAGTTAACATAAGAATTAACAATACTTCTACAGCATGTATTAATCTTAGTTAATTTCAACATTTACTAATACATTATTAAAATCAAATGTTACATTTGTTAACCTTAGTTAATGCACTGTGAACTAACATGAACAAACAATGAAAAGCTGGGCTAACTAACATTAAAAAAATAATAAATATTGTAACAAATGAATTGCTCATTGTTAGTTCATGTTAGTTAATACATTAACTAATGTTAAAGGGGTCATATAATGCCACTTTTACAAGATGTAAAATAAGTCTCTGATGTCCCCAGAGTGTGTATGTGAAGTTTTAGCTCAAAATACCCTACAGATAATTTTTTATAGAATGTAAATTTGTTACTTTTTGAGGGTGAGCAAAAACGCTCCGTTTTTGTGTGTGTCCCTTTAAATGCAAATGAGCTGCTGCTCCCAAGAAGAGGGTGGAGTTTCAAGAGCTCATGTTAGCAGCTCTGATTACCTCACGCAGACTCACTGAAACTGTCAGCCTTTTATGTTCAAACCGGAATCGGACAATGATGGAGAGACTCAAGAAGAAGTGACAACATGTAGAATGCAACAGGACGTTTCTGAATGGTTAGTTGATGAATTTATGTAGCTAATGTGTAGTTAACTATCTTAAAGTCATTGATTAGCATATTCTGTCATGATAACCGCTCGTGTTGGAACTGTTGTAAGATGCCTTCAAAGCCAGAGAATATATGTTGCATGAAGATAGAACAGGTATAGTTTGGTTTAATTATACGGTTATAACTTATGTTGTTATCTTGCTTTTATGAAACGCTAATGCATTTGTTACGTACTGTATTGCAACATGGCCTCACCCCCTTTGTTGCGTGTTCTCAGAGGAAGGGTTTTTGTAAATTTTAGAGTTAGTGATGTCACTAACCCGGGAAGAAGCTTGTTGTAGTCCCTACCAGCCGTTTGTTGTAGTCCTTAAAAAGCGATTTCTTTAAAAGAAAATATCTCCCTTTACAATGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGCAGATGTTGTTTATGCTCAAAAAGCAACATTACACACTAACTAAAGTTAAAAAAGTTAAATCATATTCAACCACCCCTTTAGTTAATAAGAATTGAATAAGAAAGCTCTTTAACCATAATTGTTCCTAATAAGAATTGAATTAGAGAGCGCTCTAATTTAATTGTTACTAGTAAAAGTGCAATTACAACGAGTCACCCTGGGAACGTTAAAAGCTAATACAGCTTGCCATAGAACTGGAATAATTGGACTGTTTGAGCATTTGCCATATAAGATCTGTTTGTAAAGGCAAAAATGTGGGTCTTACTGCACTGAACGCCCAGCATGATCCACAATCCTTCTGGTCTTTAACATCGGTCACATAGCCCTTGTCCCTCCAGTCAACGGTATCGGGCAGCACAGCGCTATCTCTCAGCCGGAAGAATGTGGAACCACCACGGGCCTTAGTGTTGTTCATGGAGCCCAGGCATCCATGGAACGCTACCTGTCTGTATTCCTCATTGCTCTGAGAGAGGAATATGATAAAAATATGATAAATTAGTAAAACAGAAAAACTTTTCAGTATTAAAATATTGTTTGTGTGTGTATATATATATATATCTATCTATATATGTATACTTTTTTTTTTCTCCTTACCATGTCAGCAAAGTATGTCATGCCAAGCTTGTAGGATTTGAAGCCCTGATCTGCCATCATGTTGTGGACCAAAACCAGTTTGCGATTAGACATCCAGGTCATCTTACGGTGCGACTCTTCCTCAGTAGAACGGTAGCTCTTACCTGAGGCACCAAATTTCATTTTCCATGCGTGGAACTCCATGTCCTCCAGAGAAAGACTGGCAGCACTGGCAACAGCCAGAAAAGCAGCGGTAACAACCAAAAGCCTCATCCTGCAGAGAGAAAGAGATAACACAAGTGTGAGGTCGGGCTACGGTGCACAAGTTAAAAAAGAACTGAGTCCCTAATGTCACTGTTTCCTTTCTTCTTTAACACTCCCACACATTGTTTTTCAGTATAGTTCCAGTATATTTCCATATGATTGAAATGTGGTTAAACCTGAGTTTGAGAGTACTTACTTGTGATGGTATGTTAGATTTCCTTGATGTCAGTCAGCTGCGTGTCAGTGTTTGTGAGAATGAAGGTTAGGGTTTTTATAGGAGTCTTTAGTGTCTTTGATCAGGTGCCTCTCATAAACCCATAAAAGAGACAGTGATGCTGAGTGTAGAGAAAATTAGAGGGGAAATTACATAACAACAACTGTTTTGCAAATATGGGTGTAATACTGGGGAAGACACTGTGTGAAGGGAAGTTTCCTGTAAACACCAATCAGTGATTAATTTCTTCTTTGTTATATATATATATATAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU434593 lncRNA downstream 120703 773205 ~ 773517 (-) True G380147
TU434587 lncRNA downstream 125511 768482 ~ 768709 (-) True G380144
TU434585 lncRNA downstream 127895 766019 ~ 766325 (-) True G380142
TU434368 lncRNA downstream 193027 693692 ~ 701193 (-) True G379936
TU434362 lncRNA downstream 211391 682502 ~ 682829 (-) True G379930
TU434649 lncRNA upstream 32933 931450 ~ 931696 (-) True G380185
TU434666 lncRNA upstream 77321 975838 ~ 976063 (-) True G380202
TU434701 lncRNA upstream 166724 1065241 ~ 1065587 (-) True G380237
TU434706 lncRNA upstream 183944 1082461 ~ 1083619 (-) True G380242
TU434731 lncRNA upstream 251377 1149894 ~ 1150228 (-) True G380266
CI01000189_00859327_00862617.mRNA mRNA downstream 31603 858786 ~ 862617 (-) True CI01000189_00859327_00862617
CI01000189_00831218_00832634.mRNA mRNA downstream 59134 831001 ~ 835086 (-) True CI01000189_00831218_00832634
CI01000189_00797964_00824109.mRNA mRNA downstream 70111 796650 ~ 824109 (-) True CI01000189_00797964_00824109
CI01000189_00764790_00765233.mRNA mRNA downstream 128444 764674 ~ 765776 (-) False CI01000189_00764790_00765233
CI01000189_00744231_00759517.mRNA mRNA downstream 134703 744103 ~ 759517 (-) True CI01000189_00744231_00759517
CI01000189_01256704_01259709.mRNA mRNA upstream 358139 1256656 ~ 1259895 (-) True CI01000189_01256704_01259709
CI01000189_01289557_01297885.mRNA mRNA upstream 390753 1289270 ~ 1297912 (-) True CI01000189_01289557_01297885
CI01000189_01321624_01323067.mRNA mRNA upstream 422930 1321447 ~ 1323388 (-) True CI01000189_01321624_01323067
CI01000189_01342802_01344801.mRNA mRNA upstream 444275 1342792 ~ 1344801 (-) True CI01000189_01342802_01344801
CI01000189_01391124_01392266.mRNA mRNA upstream 492125 1390642 ~ 1393944 (-) True CI01000189_01391124_01392266
TU434342 other downstream 128843 753257 ~ 764109 (-) True G379912
TU435899 other upstream 2060591 2959108 ~ 2961667 (-) True G381299
TU435927 other upstream 2100356 2998873 ~ 3006444 (-) True G381317
TU436781 other upstream 2932110 3830627 ~ 3832613 (-) True G382060
TU436773 other upstream 2987045 3885562 ~ 3892909 (-) True G382052
TU436879 other upstream 3247073 4145590 ~ 4146084 (-) True G382153

Expression Profile