RNA id: TCONS_00018603


Basic Information

Item Value
RNA id TCONS_00018603
length 2107
lncRNA type inter_gene
GC content 0.40
exon number 6
gene id XLOC_009471
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 40356379 ~ 40360753 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGAGAAACCGCCATTTTCTTTGCGCTGTCTTTGAGGGGAAGCGAGTGAAATTCTGTGTGAGACGTAAGTTATTTAgtgtgtatttaacaattttcataagaaataacacacttagtttacttagtataatatacacgcgcttttttttctgtttctccgcCTGATGGCCAACTTGTTGCTCCGCCTCACGCTGACCTGTGCTCGCCTTATGGCTGAACTGTTGCTCCGAGTCCGCCTGACGAGCCACCTGTTTCTCCGGatctgtttctccgcctaacggcgacctgtttctccgaacctgtttctccggacctgtttctccgcctaacggcgacctgtttctccggacctgtttctccgcctaacgcCCGAGCTGTTGCTCCGCCTAACGCCTGACCTGTGCTCGCCTCACGCCCAGCCTGTTGATCGGTGGACGGGTAAGCGCGCATGGCATCGGAAGGAGCTCGAAAAGTATAAGgtgatgacagtaagtaacgttactgtgatttgtgatctttctggggtgttaactgtaaagcaatggataattgcgtgaaaatcaaactaaaagaatgcaatcttgaggagttaatccccacatttgaagcacagGAGCGAACCTTTCCTCGTTTTTAGGTCAATTTGAATACAATTCAGAGGggtggcatgggggcgcagtgggtagtgctgtcgcctcacagcaagatggtcgctggtttgagccttggatgggtttcccctccacagtccaatgacatgcggtgtagctgaattggattgggaCCAATATTGCTGAGTATCTTCATCCATTGAATTCAAGAATCTATTGAGTTTCCTCATGTTCTCATCCTTGGAGACCACCACTTCTTTCAAGCCTTTGCTCACGTGCTGTGCTATTTATTATTGCAAAGTACATTACTTGCCAAAGTGGACGTTTGCTATAAAGCATTCTACATCTTTGGTGTGAACTACCCCAAGCAGTGTTCCCTGGTGTGGCAGACTGTGGTTTATGGACATCCTGGGGAGGAGACACTAGCAGTAAGGGTTCTGCTAGCATTAatttttgctgacaaacagtaatcattaatactgtgacctcactgcttccttggattctgtgttctttaacttgtactttggattgtgggggaaaaggagcacccagagaaaacccacacgaacacggggaaaacatgcaaactccacacagaaacaccaactgacccagctgaggcttaaaccaccgaccttgttgctgtgaggcaatcgtactacccactgtgccaccatgacacccatttctaaagaatagttttaataactcatttctaataactgatttcttttctctttgctatgatgacggcacataataatggactagatattttttaagacactctacactgcagttacattgcaactaatgtttcttacagactcttttatatctcaggattgatgtttgcacatgattgttcgagtaaaagttaaaaaaagttttcctatttcaaatttgttttaaaatgcttccatcctcaggtttcattttaacttttatatctgttttttcttcaaaactgcatttacattgaacttgatcatccttactgatgattgctttatagctcatatattgatgtttgcacataattgttaaagggaaagttataaaatgttttcttattttttcttaatataaaatttgtattttcttagtttttattgtttgttttgttttttcaagctgtttgatgccttttcattattactttcacatatttttttctgcattgcagttgatgatttatatgagaatatgttgatgtttgtgctcaaattactttctgacttcagtcatttagatgcattttcattattacttccttatactattgtttttctctactctgtaataacattgcaattgccttactgatgattcctgatttataaatgatgcaaatgtttttgaatgtatttcaaatatgcattttcttaaggtaatttgtctgatttcagtctgatgcattgttactgaactttagtcagtgtttctgtgatacagtttgataaattttcacagaaatcgtcttaaccctttaa

Function

GO:

id name namespace
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0001773 myeloid dendritic cell activation biological_process
GO:0009888 tissue development biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019231 lncRNA downstream 95583 40248829 ~ 40260796 (-) True XLOC_009470
TCONS_00018598 lncRNA downstream 180517 40162306 ~ 40175862 (-) True XLOC_009469
TCONS_00018597 lncRNA downstream 195505 40160368 ~ 40160874 (-) False XLOC_009469
TCONS_00019230 lncRNA downstream 226838 40128606 ~ 40129541 (-) True XLOC_009468
TCONS_00018592 lncRNA downstream 227303 40128606 ~ 40129076 (-) False XLOC_009468
TCONS_00019233 lncRNA upstream 708190 41068774 ~ 41072197 (-) True XLOC_009472
TCONS_00019234 lncRNA upstream 877661 41238245 ~ 41245821 (-) False XLOC_009474
TCONS_00018610 lncRNA upstream 877661 41238245 ~ 41246009 (-) True XLOC_009474
TCONS_00019235 lncRNA upstream 1279857 41640441 ~ 41667355 (-) False XLOC_009483
TCONS_00018634 lncRNA upstream 1282270 41642854 ~ 41667355 (-) True XLOC_009483
TCONS_00018599 mRNA downstream 88894 40217256 ~ 40267485 (-) False XLOC_009470
TCONS_00018600 mRNA downstream 109983 40220678 ~ 40246396 (-) False XLOC_009470
TCONS_00018593 mRNA downstream 180485 40137564 ~ 40175894 (-) False XLOC_009469
TCONS_00018607 mRNA upstream 808627 41169211 ~ 41234144 (-) False XLOC_009473
TCONS_00018608 mRNA upstream 811970 41172554 ~ 41235027 (-) False XLOC_009473
TCONS_00018609 mRNA upstream 818059 41178643 ~ 41234139 (-) True XLOC_009473
TCONS_00018611 mRNA upstream 889188 41249772 ~ 41290415 (-) False XLOC_009475
TCONS_00018612 mRNA upstream 927535 41288119 ~ 41310340 (-) False XLOC_009475
TCONS_00018590 other downstream 287252 40069011 ~ 40069127 (-) True XLOC_009467
TCONS_00018535 other downstream 2627213 37727834 ~ 37729166 (-) True XLOC_009432
TCONS_00018517 other downstream 3482013 36874251 ~ 36874366 (-) True XLOC_009420
TCONS_00018513 other downstream 3823132 36529465 ~ 36533247 (-) True XLOC_009417
TCONS_00018488 other downstream 5144142 35167295 ~ 35212237 (-) True XLOC_009400
TCONS_00018622 other upstream 1032817 41393401 ~ 41396073 (-) True XLOC_009478
TCONS_00018633 other upstream 1168676 41529260 ~ 41543440 (-) True XLOC_009482
TCONS_00018660 other upstream 1917089 42277673 ~ 42283815 (-) True XLOC_009502
TCONS_00018661 other upstream 2168206 42528790 ~ 42528904 (-) True XLOC_009503
TCONS_00018665 other upstream 2367886 42728470 ~ 42728586 (-) True XLOC_009507

Expression Profile

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