RNA id: TU434288


Basic Information

Item Value
RNA id TU434288
length 336
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G379863
representative True

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 1336765 ~ 1337311 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TACATATTCTTAAGAGGAAGTGGTTACATAGAGGTTGAACCAATGAGGGTTTTTAAATGACAAAACCATATGTAGAGAGCAGGGTGGCCAAAGGCTGACATAATACAGACTTATAATACATTTTAAAGGTAGATGGAGCAATTAATATGCAGGCTTTTTACACAATTTAAAATTACCAAAAAAAAAAAAAAAAAAGAAGAAAAAAATCATCACAAAATTGGTATAATCACAAGTTGATTCTTAAACCCAGAACAGTTAAAAATAAGATTGTCCTCTCTCCCCAGCACCTGAGTGTGAGGTTACACTCTTCGGTGAATAGCTGAAGGCAGCGGGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU434249 lncRNA upstream 119633 1216776 ~ 1217132 (+) True G379825
TU434036 lncRNA upstream 229588 1096585 ~ 1107177 (+) True G379660
TU434202 lncRNA upstream 341656 994849 ~ 995109 (+) True G379786
TU434194 lncRNA upstream 360155 975065 ~ 976610 (+) True G379780
TU434086 lncRNA upstream 484698 842387 ~ 852067 (+) True G379700
TU434281 lncRNA downstream 6498 1343809 ~ 1344797 (+) True G379856
TU434883 lncRNA downstream 132873 1470184 ~ 1470390 (+) True G380398
TU434928 lncRNA downstream 465210 1802521 ~ 1802813 (+) True G380432
TU434930 lncRNA downstream 466522 1803833 ~ 1804049 (+) True G380434
TU434931 lncRNA downstream 467974 1805285 ~ 1805565 (+) True G380435
CI01000189_01310217_01313204.mRNA mRNA upstream 22916 1309079 ~ 1313849 (+) True CI01000189_01310217_01313204
CI01000189_01149997_01208771.mRNA mRNA upstream 127726 1148842 ~ 1209039 (+) True CI01000189_01149997_01208771
CI01000189_01068817_01136608.mRNA mRNA upstream 200157 1068817 ~ 1136608 (+) True CI01000189_01068817_01136608
CI01000189_00987665_01058757.mRNA mRNA upstream 277784 987525 ~ 1058981 (+) False CI01000189_00987665_01058757
CI01000189_00968023_00981490.mRNA mRNA upstream 354951 968023 ~ 981814 (+) True CI01000189_00968023_00981490
CI01000189_01347522_01351375.mRNA mRNA downstream 10211 1347522 ~ 1352267 (+) True CI01000189_01347522_01351375
CI01000189_01566029_01667788.mRNA mRNA downstream 228718 1566029 ~ 1667788 (+) True CI01000189_01566029_01667788
CI01000189_01699326_01704681.mRNA mRNA downstream 362015 1699326 ~ 1705686 (+) True CI01000189_01699326_01704681
CI01000189_01708164_01731675.mRNA mRNA downstream 369696 1707007 ~ 1732935 (+) True CI01000189_01708164_01731675
CI01000189_01760609_01763883.mRNA mRNA downstream 423298 1760609 ~ 1763950 (+) True CI01000189_01760609_01763883
TU434037 other upstream 277380 1016031 ~ 1059385 (+) True CI01000189_00987665_01058757
TU434221 other upstream 323862 1012546 ~ 1012903 (+) False G379799
TU434222 other upstream 323931 1012546 ~ 1012834 (+) True G379799
TU433965 other upstream 839857 475615 ~ 496908 (+) True G379600
TU435687 other downstream 1501910 2839221 ~ 2841125 (+) True G381120
TU436136 other downstream 2288425 3625736 ~ 3626855 (+) True G381491
TU436323 other downstream 2783076 4120387 ~ 4122344 (+) True G381655

Expression Profile