RNA id: TCONS_00018602


Basic Information

Item Value
RNA id TCONS_00018602
length 737
lncRNA type retained_intron
GC content 0.42
exon number 5
gene id XLOC_009471
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 40356379 ~ 40360753 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTCGAAAAGTATAAGGTAACTAATGAAACTAACGTGAAGCATGTTTGATGAccactttataaacacaacacctaggataatttaggagctttttattgtaataaaatgccttttgaatgacacagatttttatgttggctaggtgatgacagtaagtaacgttactgtgatttgtgatctttctggggtgttaactgtaaagcaatggataattgcgtgaaaatcaaactaaaagaatgcaatcttgaggagttaatccccacatttgaagcacagGAGCGAACCTTTCCTCGTTTTTAGGTCAATTTGAATACAATTCAGAGGggtggcatgggggcgcagtgggtagtgctgtcgcctcacagcaagatggtcgctggtttgagccttggatgggtttcccctccacagtccaatgacatgcggtgtagctgaattggattgggaCCAATATTGCTGAGTATCTTCATCCATTGAATTCAAGAATCTATTGAGTTTCCTCATGTTCTCATCCTTGGAGACCACCACTTCTTTCAAGCCTTTGCTCACGTGCTGTGCTATTTATTATTGCAAAGTACATTACTTGCCAAAGTGGACGTTTGCTATAAAGCATTCTACATCTTTGGTGTGAACTACCCCAAGCAGTGTTCCCTGGTGTGGCAGACTGTGGTTTATGGACATCCTGGGGAGGAGACACTAGCAGTAAGGGTTCTGCTAGCATTAatttttgctgaca

Function

GO:

id name namespace
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0001773 myeloid dendritic cell activation biological_process
GO:0009888 tissue development biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDART00000154444

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019231 lncRNA downstream 96617 40248829 ~ 40260796 (-) True XLOC_009470
TCONS_00018598 lncRNA downstream 181551 40162306 ~ 40175862 (-) True XLOC_009469
TCONS_00018597 lncRNA downstream 196539 40160368 ~ 40160874 (-) False XLOC_009469
TCONS_00019230 lncRNA downstream 227872 40128606 ~ 40129541 (-) True XLOC_009468
TCONS_00018592 lncRNA downstream 228337 40128606 ~ 40129076 (-) False XLOC_009468
TCONS_00019233 lncRNA upstream 708653 41068774 ~ 41072197 (-) True XLOC_009472
TCONS_00019234 lncRNA upstream 878124 41238245 ~ 41245821 (-) False XLOC_009474
TCONS_00018610 lncRNA upstream 878124 41238245 ~ 41246009 (-) True XLOC_009474
TCONS_00019235 lncRNA upstream 1280320 41640441 ~ 41667355 (-) False XLOC_009483
TCONS_00018634 lncRNA upstream 1282733 41642854 ~ 41667355 (-) True XLOC_009483
TCONS_00018599 mRNA downstream 89928 40217256 ~ 40267485 (-) False XLOC_009470
TCONS_00018600 mRNA downstream 111017 40220678 ~ 40246396 (-) False XLOC_009470
TCONS_00018593 mRNA downstream 181519 40137564 ~ 40175894 (-) False XLOC_009469
TCONS_00018607 mRNA upstream 809090 41169211 ~ 41234144 (-) False XLOC_009473
TCONS_00018608 mRNA upstream 812433 41172554 ~ 41235027 (-) False XLOC_009473
TCONS_00018609 mRNA upstream 818522 41178643 ~ 41234139 (-) True XLOC_009473
TCONS_00018611 mRNA upstream 889651 41249772 ~ 41290415 (-) False XLOC_009475
TCONS_00018612 mRNA upstream 927998 41288119 ~ 41310340 (-) False XLOC_009475
TCONS_00018590 other downstream 288286 40069011 ~ 40069127 (-) True XLOC_009467
TCONS_00018535 other downstream 2628247 37727834 ~ 37729166 (-) True XLOC_009432
TCONS_00018517 other downstream 3483047 36874251 ~ 36874366 (-) True XLOC_009420
TCONS_00018513 other downstream 3824166 36529465 ~ 36533247 (-) True XLOC_009417
TCONS_00018488 other downstream 5145176 35167295 ~ 35212237 (-) True XLOC_009400
TCONS_00018622 other upstream 1033280 41393401 ~ 41396073 (-) True XLOC_009478
TCONS_00018633 other upstream 1169139 41529260 ~ 41543440 (-) True XLOC_009482
TCONS_00018660 other upstream 1917552 42277673 ~ 42283815 (-) True XLOC_009502
TCONS_00018661 other upstream 2168669 42528790 ~ 42528904 (-) True XLOC_009503
TCONS_00018665 other upstream 2368349 42728470 ~ 42728586 (-) True XLOC_009507

Expression Profile

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