RNA id: TU435830


Basic Information

Item Value
RNA id TU435830
length 346
lncRNA type antisense_over
GC content 0.51
exon number 2
gene id G381239
representative True

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 2785788 ~ 2786225 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGAGGGCCAGTGGATCTCATTGTAAGGGCTGATGCGTGTGTACTGAGTCTGCAAGGTGAAGGGGAATGAAGTCACATGGAGTGTGAGGATGTTGGGAGCATCTCGAATCTGCCTGCAGTTCAACAGTCCATCCACTAGTCCTAAGTTGGAGTCTCCTCCACTGCACTGTCCACTGCTGATGTCCCAGTGCGCATGATCATGCACCAGTATGAATAGTGTATAGGGGTTCATTTTGGATTTCTGAATGAGGCTGTTGATCTTTCCTACTGCGCTCTGGTTCAGCTTTACCACGTACTGCTCCGCCTCCTTCATCGACAAGCAGTCTTGGTTCAGCCCCAACTCCCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU435802 lncRNA downstream 32311 2753193 ~ 2753477 (-) True G381216
TU435788 lncRNA downstream 48831 2736684 ~ 2736957 (-) True G381202
TU435771 lncRNA downstream 67943 2717360 ~ 2717845 (-) True G381185
TU435770 lncRNA downstream 69287 2716296 ~ 2716501 (-) True G381184
TU435608 lncRNA downstream 134489 2650977 ~ 2651299 (-) True G381047
TU435834 lncRNA upstream 1655 2787880 ~ 2788744 (-) True G381243
TU435837 lncRNA upstream 6807 2793032 ~ 2794349 (-) True G381245
TU435812 lncRNA upstream 17782 2804007 ~ 2820766 (-) True G381223
TU435845 lncRNA upstream 35444 2821669 ~ 2821958 (-) True G381253
TU436576 lncRNA upstream 302140 3088365 ~ 3088554 (-) True G381886
CI01000189_02686987_02689446.mRNA mRNA downstream 96153 2686041 ~ 2689635 (-) True CI01000189_02686987_02689446
CI01000189_02663877_02665709.mRNA mRNA downstream 119998 2663089 ~ 2665790 (-) True CI01000189_02663877_02665709
CI01000189_02469062_02471153.mRNA mRNA downstream 314635 2468614 ~ 2471153 (-) True CI01000189_02469062_02471153
CI01000189_02450025_02461432.mRNA mRNA downstream 324289 2449828 ~ 2461499 (-) True CI01000189_02450025_02461432
CI01000189_02404459_02433659.mRNA mRNA downstream 352129 2404459 ~ 2433659 (-) True CI01000189_02404459_02433659
CI01000189_02823407_02846026.mRNA mRNA upstream 37182 2823407 ~ 2846026 (-) True CI01000189_02823407_02846026
CI01000189_02924018_02946613.mRNA mRNA upstream 137076 2923301 ~ 2946613 (-) True CI01000189_02924018_02946613
CI01000189_02961166_02963382.mRNA mRNA upstream 174345 2960570 ~ 2963382 (-) False CI01000189_02961166_02963382
CI01000189_02986636_02986941.mRNA mRNA upstream 200323 2986548 ~ 2986941 (-) True CI01000189_02986636_02986941
CI01000189_03097932_03102218.mRNA mRNA upstream 311457 3097682 ~ 3102815 (-) True CI01000189_03097932_03102218
TU434639 other downstream 1887348 894220 ~ 898440 (-) True G380177
TU434342 other downstream 2020411 753257 ~ 764109 (-) True G379912
TU435899 other upstream 172883 2959108 ~ 2961667 (-) True G381299
TU435927 other upstream 212648 2998873 ~ 3006444 (-) True G381317
TU436781 other upstream 1044402 3830627 ~ 3832613 (-) True G382060
TU436773 other upstream 1099337 3885562 ~ 3892909 (-) True G382052
TU436879 other upstream 1359365 4145590 ~ 4146084 (-) True G382153

Expression Profile