RNA id: TU435845


Basic Information

Item Value
RNA id TU435845
length 290
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G381253
representative True

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 2821669 ~ 2821958 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCCTGACTTAAACCCAATTGAGCATCTCTGGAGAGACCTAAAAATGGCTGTCCACCAACGTTTACCATCCAACCTGACAGAACTGGAGAGGATCTGCAAGGAGGAATGGCAGAGGATCCCCAAATCCAGGTGTGAAAAACTTGTTGCATCTTTCCCAAAAAGACTCATGGCTGTATTAGATCAAAAGGGTGCTTCTACTAAATACTGAGCAAAGGGTCTGAATACTTAGGACCATGTGATATTTCAGTTTTTCTTTTTTACTAAATCTGCAAAAATGTCAACAATTCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU435812 lncRNA downstream 903 2804007 ~ 2820766 (-) True G381223
TU435837 lncRNA downstream 27320 2793032 ~ 2794349 (-) True G381245
TU435834 lncRNA downstream 32925 2787880 ~ 2788744 (-) True G381243
TU435830 lncRNA downstream 35444 2785788 ~ 2786225 (-) True G381239
TU435802 lncRNA downstream 68192 2753193 ~ 2753477 (-) True G381216
TU436576 lncRNA upstream 266407 3088365 ~ 3088554 (-) True G381886
TU436596 lncRNA upstream 267667 3089625 ~ 3089953 (-) False G381901
TU436591 lncRNA upstream 267696 3089654 ~ 3090056 (-) False G381901
TU436592 lncRNA upstream 267696 3089654 ~ 3090003 (-) False G381901
TU436593 lncRNA upstream 267696 3089654 ~ 3089953 (-) False G381901
CI01000189_02686987_02689446.mRNA mRNA downstream 132034 2686041 ~ 2689635 (-) True CI01000189_02686987_02689446
CI01000189_02663877_02665709.mRNA mRNA downstream 155879 2663089 ~ 2665790 (-) True CI01000189_02663877_02665709
CI01000189_02469062_02471153.mRNA mRNA downstream 350516 2468614 ~ 2471153 (-) True CI01000189_02469062_02471153
CI01000189_02450025_02461432.mRNA mRNA downstream 360170 2449828 ~ 2461499 (-) True CI01000189_02450025_02461432
CI01000189_02404459_02433659.mRNA mRNA downstream 388010 2404459 ~ 2433659 (-) True CI01000189_02404459_02433659
CI01000189_02823407_02846026.mRNA mRNA upstream 1449 2823407 ~ 2846026 (-) True CI01000189_02823407_02846026
CI01000189_02924018_02946613.mRNA mRNA upstream 101343 2923301 ~ 2946613 (-) True CI01000189_02924018_02946613
CI01000189_02961166_02963382.mRNA mRNA upstream 138612 2960570 ~ 2963382 (-) False CI01000189_02961166_02963382
CI01000189_02986636_02986941.mRNA mRNA upstream 164590 2986548 ~ 2986941 (-) True CI01000189_02986636_02986941
CI01000189_03097932_03102218.mRNA mRNA upstream 275724 3097682 ~ 3102815 (-) True CI01000189_03097932_03102218
TU434639 other downstream 1923229 894220 ~ 898440 (-) True G380177
TU434342 other downstream 2056292 753257 ~ 764109 (-) True G379912
TU435899 other upstream 137150 2959108 ~ 2961667 (-) True G381299
TU435927 other upstream 176915 2998873 ~ 3006444 (-) True G381317
TU436781 other upstream 1008669 3830627 ~ 3832613 (-) True G382060
TU436773 other upstream 1063604 3885562 ~ 3892909 (-) True G382052
TU436879 other upstream 1323632 4145590 ~ 4146084 (-) True G382153

Expression Profile