RNA id: TU436591


Basic Information

Item Value
RNA id TU436591
length 403
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G381901
representative False

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 3089625 ~ 3090056 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATAACAGTTCATGTGACTACAGTTAATGTTATGAAGCGACGAGAATACTTTTTGTGCTATACAAATCTTTTGTTGTTTCGAATCAGTGGTTCGGAGCGTGTATCAAACTGCCAAAGTCACGCCCCCCCAGTGGTGAACCATTGAAATTTCGAAACACTTATGATGTAACGAAGCCTCGTTTACTGAAATCACATGACTTTGGCAGTTTGATACGTGCTCCGAACCACTGATTCGAAACAAAAGATTCGTAAAGTTTCGAAGCTCCATGAAGCAGTGTTTTGAAATCGCCCATCACTAGATATTGTTGAATAAAGTCGCTATTTTGTTTTTTTTTGGCACACAAAAAGTATTCTCGTCGCCTCAAAACATTAAGTTTAAACCACTGTAGTCACATGAACTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU436576 lncRNA downstream 1100 3088365 ~ 3088554 (-) True G381886
TU435845 lncRNA downstream 267696 2821669 ~ 2821958 (-) True G381253
TU435812 lncRNA downstream 268888 2804007 ~ 2820766 (-) True G381223
TU435837 lncRNA downstream 295305 2793032 ~ 2794349 (-) True G381245
TU435834 lncRNA downstream 300910 2787880 ~ 2788744 (-) True G381243
TU436577 lncRNA upstream 744 3090800 ~ 3092313 (-) True G381887
TU436598 lncRNA upstream 3081 3093137 ~ 3093435 (-) True G381902
TU436610 lncRNA upstream 151225 3241281 ~ 3241515 (-) True G381914
TU436614 lncRNA upstream 173698 3263754 ~ 3264236 (-) True G381918
TU436631 lncRNA upstream 269783 3359839 ~ 3360241 (-) True G381931
CI01000189_02986636_02986941.mRNA mRNA downstream 102713 2986548 ~ 2986941 (-) True CI01000189_02986636_02986941
CI01000189_02961166_02963382.mRNA mRNA downstream 126272 2960570 ~ 2963382 (-) False CI01000189_02961166_02963382
CI01000189_02924018_02946613.mRNA mRNA downstream 143041 2923301 ~ 2946613 (-) True CI01000189_02924018_02946613
CI01000189_02823407_02846026.mRNA mRNA downstream 243628 2823407 ~ 2846026 (-) True CI01000189_02823407_02846026
CI01000189_02686987_02689446.mRNA mRNA downstream 400019 2686041 ~ 2689635 (-) True CI01000189_02686987_02689446
CI01000189_03097932_03102218.mRNA mRNA upstream 7626 3097682 ~ 3102815 (-) True CI01000189_03097932_03102218
CI01000189_03114741_03118058.mRNA mRNA upstream 23895 3113951 ~ 3118058 (-) True CI01000189_03114741_03118058
CI01000189_03126316_03126839.mRNA mRNA upstream 36056 3126112 ~ 3126999 (-) True CI01000189_03126316_03126839
CI01000189_03130245_03141782.mRNA mRNA upstream 39367 3129423 ~ 3141782 (-) True CI01000189_03130245_03141782
CI01000189_03165381_03189571.mRNA mRNA upstream 74410 3164466 ~ 3189571 (-) True CI01000189_03165381_03189571
TU435927 other downstream 83210 2998873 ~ 3006444 (-) True G381317
TU435899 other downstream 126200 2959108 ~ 2961667 (-) True G381299
TU434639 other downstream 2191214 894220 ~ 898440 (-) True G380177
TU434342 other downstream 2324277 753257 ~ 764109 (-) True G379912
TU436781 other upstream 740571 3830627 ~ 3832613 (-) True G382060
TU436773 other upstream 795506 3885562 ~ 3892909 (-) True G382052
TU436879 other upstream 1055534 4145590 ~ 4146084 (-) True G382153

Expression Profile