RNA id: CI01000208_00622771_00646633.mRNA


Basic Information

Item Value
RNA id CI01000208_00622771_00646633.mRNA
length 3929
RNA type mRNA
GC content 0.53
exon number 20
gene id CI01000208_00622771_00646633
representative True

Chromosome Information

Item Value
chromosome id CI01000208
NCBI id null
chromosome length 699623
location 622771 ~ 647166 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCTATGGGAGCCCAGCTGATCGGCATGTTTGAGGGCAAAGGCACGGGCATCCAGTGGAATAACATGTTTGATCCGGTAACGGTGGACGATGACTTCTCCCTGGCCCAGGTGATCGGACTGCTGCTGCTAGACGCTGTGCTGTACGCTCTGGTCGCCTGGTACGTGGAAGCAGTTTTTCCAGGAGAGTATGGTGTCCCTCGTCCATGGTACTTCTTCATGCTGGTACGTATTGCCTACATTGCCATATTTTTGAGATTAGCGGTTCACCCATGGGAAGTCTTTAAAGTGAGAGAGAATGAGAACCTGCATGTATGCAACTGGAGTGATTTCCTGACCGATGGGCCCTCGAAAGACAGGAAGCATTTGGTCTCGGCAGGAAAACCCTGCTTATGTCATCAAGACGGCCAGGAACCCTCGTACTGGTGCAGCAGCCCTCGTGTGGCCTTTCTGAAGGAGAAGGAGGATGATGAGGATGCTGAGAAGGCAATGAAGGGGGAATTTATCGAAGCGGAGCCAGCTGGACTGGTCTCGGGGGTCAAGATCAAACATTTGGCTAAGGTCTTCAAAGTGGGCAATATAACCAAGGAGGCAGTGAGGGATTTAACGCTCAACATGTTCGAAAGCCAGATCACTGTCCTGCTGGGTCACAACGGAGCGGGCAAGACCACCACACTATCAATGCTGACAGGCCTTTTCCCGCCCAGCAGCGGCCGTGCGTACATTAACGGTTATGACATATGTCAGGATATGGCTCTGATCCGCCGCAGCCTGGGTCTTTGTCCGCAGCACGACGTGCTCTTCGACAACCTCACTGTCCGAGAACACCTGCTCTTCTACACACAGCTGAAGGGTTACCCTCGCAAAAAGATCCCAGATGAGGTCGACCGCATCCTTCGGATCCTTAATTTGGAGGATAAGCGTGATGCACGATCCAAGACTCTTTCTGGTGGGATGAAGAGGAAGCTTTCCATCGGCATTGCTTTGATCGGAGACTCAAAGGTGGTGATGTTGGATGAGCCCACCTCAGGAATGGACCCTTCAGCTCGACGGGCCACCTGGGACCTGCTGCAGGGCGAGAAACATGGCCGCACCATCCTGCTCACCACGCACTTCATGGACGAGGCCGACCTGCTGGGAGATCGTATCGCCATCATGGCAGGCGGGGAGCTTCAGTGCTGCGGCTCGCCGCTCTTCCTCAAGAACAAATACGGTGCTGGTTACCACATGGTTATCGTAAAAGACGCATTTTGTAACGTGTCTGAGATTACTCGTCTAGTCCACATGTATGTGCCTGACGCAACTCTAGAGAGCAGTGCAGGCGCTGAACTCTCGTACATACTGCCCAAAGAGAGCACCAGCCGGTTTGAGCTGCTGTTCGCTGAGCTGGAGATGAATCGAGACGAGCTGGGCATCGCCAGCTATGGGGCATCCGTTACCACCATGGAGGAGGTTTTTCTCAGGGTCGGGAAGCTTGTGGACTCCAGTCTGGACATTCAGGCCATCCAACTTCCGGCTCTGCAGTACCAGCATGAACGGCGGTCCAATGACTGGACCATGGACGACTCCAGCAGCATCAGCGGCATGACCGACGTGACAGATTTCACTGACAGCGGCACTATGATCTCAGAGGACTGCTCGAATATCAAACTCAACACTGGGGCCAGACTCTATATGCAGCAGTTTTACGCTATGTTCCTGAAGAGGGCGCTCTACAGCTGGCGCAACTGGAAAGTGATGGTGGCTCAGTTTCTGGTGCCACTCATTTTCACCGTGGTGGCTCTGGTGGTGGCCCGCACCGTCCCTGGCAGCCATAACTCCCCCCAGCTCCGTCTGGCGTTAAAGCAGTACGGCCCTACCCAGGTGCCCGTGGCCTTAGATGCCAACGCTGGGCCGTTGGCTGCAGCTCTGGCTGAGATCTATGCCGCACAGCTGCCTTCCCAAAAAGCCATGCCTGCCACTAATATAACAGATTTGTCAGAGTACGTACTATATAATGCCATGAGGGAGGGCGGAGCGTTCAACGAGCACTGTGTGGTGGGCGCGGCTTTCAAAGGCAGATCCAGGAGGTACGCTGAGGTCATCGGCTACTTCAACAACCAGGGCTATCACACCCCCGCTACGGCACTCATGTTGGTTGACAACGCTCTTTACAAGCTACTAGCAGGACCCAACGCCTCCATCCGCACTGGAAATTACCCCATGCCCCGCAACATGTCCGAGGCAGCGCAAAGCCAGCTTTCTGAGGGTCAGACAGGCTTCGCCATCGCCTTAAACCTCATGTACGGCATGGCGTCATTAGCCAGCACCTTTTCACTGCTCCACGTCTCCGAGCGGTCGGTGAAGTCCAAGCATTTGCAGCAGGTCAGCGGGGTCTACCTCTCCAACTTCTGGTTCTCCGCCCTGTTGTGGGACCTCATCAACTTCATGTTGCCCTGCTTGCTCATGCTGGTGGTCTTCCAAGTGTTTTCAGTAAAAGCGTTCGTGGCCGAAAACCACCTGGTGGATGTTCTGCTGTTGCTGCTTCTGTATGGCTGGGCGGTGATTCCCCTCATGTACCTGCTCAGCTTCCTGTTCTCCATGGCAGCCACAGCCTACACACGCCTCACCATCTTCAACATCATCAGCGGCACCGCAACCTTCCTCACGGTCACCATCATGACCATACCTGAGCTGAATCTGCTAGACCTCTCCTATATCCTGGATAAAGTATTCCTGATCTTCCCAAATTACTGCCTGGGCATGTCCTTCAGCGAGTTCTACCAGAACTACGAGATCATCACCTTCTGCACGTCCAGCTTTTTTGCCGAGTACATCTGCAATGGCGGCAATAAGAGGAAGTTGAGTGCAGGCATGGCTCTGATCGGTGGACCACCTGTGATCTTTCTGGACGAGCCATCCACTGGCATGGACCCTGTGGCCAGACGGCTGCTTTGGGATGCAATTACACGAACCAGGGAGTCTGGCAAAGCCATCATTATAACCTCACACAGTATGGAGGAGTGCGAGGCGCTGTGTACTCGGCTGGCTGTCATGGTGAACGGCCAGTTCAAATGTTTGGGCAGCCCACAGCATCTGAAGAGCAAGTTTGGGAGCGGTTACACGCTGCTGGCAAAAGTCCGCGTGGAGACAGAGTTAGCGGAGATGGATCTTCAGCTCTTCAAAGACTTCATTGAAAACACCTTTCCAGGAAGTTCATTGAAGGATGAACACCAGGGGATGGTCCACTATCACCTGACTGACAAAACCCTTACCTGGGCACAGGTGTTCGGGGTCCTAGAAACAGCCAAACAGAAGTACGGCATCGAGGACTACTGTGTCAGCCAGATCTCACTGGAGCAGGTGTTTCTCGGCTTCGCCCAGTTCCAGCACTGCGCTGAGGCCTGCAGGAAATGACACGCTGAAGCTCAGAGGGGATGACGCTCCTTGAGTTGATCTTCACCTGCTGAGTAGAAGGTACATCCTGGGCCGACTGACTCTCCGTCAGACAGTGGACATTGCTCAGGTGTCTCTCTTCACTTACACATTTCTGACATGATCATACATGCATAACACACACTTCCGGACTCAAACACTGTGTCGCACGGCGGCAGGACCATTAACGCAAGATCTTGGCCAGTTGGGTAACCATATACAGTGTTTATTTAACATCTGTCTGTGCGTTTGCGAGCAGTTTGAGTTTCAACGGGAAGTTCCGTCACACTCTGAAACACTCTTTGAATTTTAATCGGTGGGTCTCCGCACCGCTCGCCTGAAAGGAAGTGGTGTTTGTTCATCATCTGTGAGAGTGACAGACGAGATGTCTCATGTGTGCACTTGTGTACGATTACTGTTATTTATGGATGACTTTTTTTGTTTGTTTCTCTTCACCTGTTTTCTATTGTGGTCTTAAGGCTAAAGGTACATGCACTTCGCCCCCTTTCTACACA

Function

GO:

id name namespace
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG:

id description
K05643 ABCA3; ATP-binding cassette, subfamily A (ABC1), member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU447336 lncRNA upstream 69904 552660 ~ 552867 (+) True G390737
TU447328 lncRNA upstream 73462 548726 ~ 549309 (+) True G390729
TU447223 lncRNA upstream 119630 475836 ~ 503141 (+) True G390631
TU447217 lncRNA upstream 137069 483020 ~ 485702 (+) True G390625
TU447213 lncRNA upstream 163353 458666 ~ 459418 (+) True G390621
TU447348 lncRNA downstream 24723 671889 ~ 672382 (+) True G390749
CI01000208_00611303_00616477.mRNA mRNA upstream 5971 611303 ~ 616800 (+) True CI01000208_00611303_00616477
CI01000208_00571370_00591616.mRNA mRNA upstream 30287 571370 ~ 592484 (+) True CI01000208_00571370_00591616
CI01000208_00554756_00555762.mRNA mRNA upstream 65674 554569 ~ 557097 (+) False CI01000208_00554756_00555762
CI01000208_00533761_00535474.mRNA mRNA upstream 87297 533611 ~ 535474 (+) True CI01000208_00533761_00535474
CI01000208_00508002_00511190.mRNA mRNA upstream 111514 507148 ~ 511257 (+) True CI01000208_00508002_00511190
CI01000208_00655853_00657320.mRNA mRNA downstream 6847 654013 ~ 657529 (+) False CI01000208_00655853_00657320
CI01000208_00659672_00669637.mRNA mRNA downstream 12465 659631 ~ 669655 (+) False CI01000208_00659672_00669637
CI01000208_00674776_00677559.mRNA mRNA downstream 27556 674722 ~ 678098 (+) False CI01000208_00674776_00677559
CI01000208_00679245_00685898.mRNA mRNA downstream 32079 679245 ~ 685908 (+) True CI01000208_00679245_00685898
CI01000208_00688872_00693800.mRNA mRNA downstream 41706 688872 ~ 693800 (+) True CI01000208_00688872_00693800
TU447206 other upstream 64076 554610 ~ 558695 (+) False CI01000208_00554756_00555762
TU447207 other upstream 64076 554610 ~ 558695 (+) True CI01000208_00554756_00555762
TU447215 other upstream 124210 497603 ~ 498561 (+) True CI01000208_00479959_00498664
TU447202 other downstream 8397 677372 ~ 677519 (+) True CI01000208_00674776_00677559
TU447210 other downstream 12432 679966 ~ 680035 (+) False G390620
TU447211 other downstream 12432 675917 ~ 676057 (+) False CI01000208_00674776_00677559
TU447212 other downstream 12502 679966 ~ 680035 (+) True G390620
TU447203 other downstream 18751 677372 ~ 677519 (+) True CI01000208_00674776_00677559

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00049634 False 5112 mRNA 0.54 30 NC_007114.7 12593558 ~ 12698292 (+)
bowfin (Amia calva) AMCG00018111 True 6438 mRNA 0.61 33 CM030135.1 2007345 ~ 2028977 (-)