RNA id: AMCG00018111


Basic Information

Item Value
RNA id AMCG00018111
length 6438
RNA type mRNA
GC content 0.61
exon number 33
gene id AMCG00018111
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2006906 ~ 2067584 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGCCCAACAGCTCTTGTTTTCCACACCGAGCTGGGCCGATGCGGGCAGGTGTGTCCCGGGCGGCGTGGTGCGCACCTGCGCCCTGTCCCCGGTCATGTGACGGGGGCTCCGCGCATCACGTGACGCCCGTGTTGACGGTCCGCCGTCTCGCACAGCGCGCAGAGGAGCCGGACCCGCCGGCCGTGCTGCAGTGTCCGCCCGCCGCACCTGAGCCCAGCGGCCGCCCCGCACCCTGCGCGTCCTGCGTGAGAATCGGACGCTTGTGCTTCGCGGTGCGCctgggagagacagacagaccggTGCGCCGCAAGAGCTCGCCTGACCCCGGGATTGGATGGAAAGCCCTCCCGCTGCCGGTCCTGTCGTGCCGGGCGCCTCCACACACTCTCGGGAACATGGCTGTGCTGCGGCAGTTCCGCCTCCTCCTCTGGAAGAATTACATCCAACAGAAGCGTCAGATCCTGGTGACAGTGATTGAGATCGTGCTGCCGCTGCTGTTCGCCGCGATCCTCATCGTGCTGCGTCAGAGGGTCAGCTCCACCACCTTCCCCAACGCCACCTCCTTCAACTCCTTCTCCCTGTCCGGCCTGCCCTGGCCGCTGTTCTGGGACTCCCTCCAGCTGGCCTACATCCCCGGCAATGCCAGCGCAGTGCGGCAGATTGCCACCGATGTGCAGAAGAGCCTCGGCCACATGGCCATCAGCGAAGTTCGCGGCTTCGGCACCGAGCAGGAGTTCGAGCACTATGTGAAGACCGACCCGCGGTCGGGCAAGATTCTGGCAGCGCTGGTCTTCGATCACGTCTTCACTAGCGATGACGAGCCGCTGCCCCTGCAGGTGAGATACCACCTGAGGTTCAAGTACAGCCCCCGCAATGCCCCATCGTCGGAGAAGTCCGAGCTGAACCCCAACAACGACCGTGACTGGCACACACTCAACCTCTTCCCCCTGTTCCAGCTCCCAGGGCCCAGGGAGCGCAAGGATGCTGAGGGGGGCACCCCAGGCTACTACCGCGAGGGCTTCCTGTCAGTGCAGCACGCGGCCAACCAGGCCATCATCCGCGCCCGGGCCGGCCTGCTGGGCGCCCCGCCGGTGCAGCATGTCCGCGTCTGGATGTCCCGCTTCCCCTTCCCGCCCTACATCAACGACTTCTTCATCTTGGCTATCCAGAACCAGCTGCCCCTGCTGCTGGTGCTCAGCTTTACCTACACCGCCCTGAACATCGTGCGCGCCGTGGtgcaggagaaggagaggaagctCAAGGAGTACATGCGGATGATGGGTCTCAGTAACTGGCTGCACTGGACCGCCTGGTTCCTCATGtttttcctcttcctcatcaTCTCGGTTTTCTTCGTCACGCTACTCTTCTGCGTGAAGGTGAGCCCCAATGGTGCGGTGCTGACCTACAGCGACCCCACGCTGGTCTTCGCCTTCCTGCTGACCTTCGCTGTGTCTACCATCAACTTCAGCTTCATGATCAGCGCCTTCTTCTCCAGAGcCAATGTGGCGGCAGCAGCGGGTGGCTTCATCTACTTCCTGACCTACATCCCCTACGTGTTCATCTCGCCGCGCTACGATCTGCTGTCGCACGCGCAGAAGGTGTCCGCCTGCCTGGTGTCCAACGTGGGCATGGCCATGGGCGCCCAGCTCATCGGCATGTTCGAGGGCAAAGGGACGGGGATCCAGTGGACCAACCTGTTCGACGCGGTGACGGTGGACGACACGTTCTCACTGGCGCAGGTGATGGGCATGCTGCTGCTGGACGCCGTGCTGTACGGGCTGGTGGCCTGGTACGTCGAGGCCGTGTTCCCCGGGGAGTACGGCGTCCCCCTGCCCTGGTACTTCTTCCTCCTGCCCTCGTACTGGTGCGGCACCCCCCGCCTGGCGCTGGTgaaggagaaggaagaggaggaagaccCGGAGAAGGCCATGAAGGGGGAGTTCATCGAGGAGGAGCCGGCCGGCCTGGTGTCGGGGGTCAAGATCAAACGCCTGGCCAAGGTCTTTAAAACAGGCAGTAAGACGCGGGAGGCGGTGAGGGACCTGACGGTGAACATGTATGAGGGCCAAATCACCGTGCTGCTGGGCCACAACGGAGCTGGGAAGACCACCACTCTGTCCATGCTGACCGGGCTGTTCCCCCCCAGCAGCGGCCGCGCCTACATCAACGGCTACGACATCTCTCAGGACATGGCGCTGATCCGCCGCAGCCTGGGCCTGTGTCCACAGCACGACGTCCTGTTCGACAATCTCACCGTGGGGGAGCACCTGCACTTCTACGCCCAGCTGAAGGGGTATCCCCGGGAGAAGATGCCGGACGAGGTGGACCGCATTCTTCGGATCCTGAACCTGGAGGACAAGCGGCGCTCCCGGTCCAAGACCCTGTCCGGTGGCATGAAGCGCAAGCTCTCCATCGGGATCGCGCTCATCGGGGACTCCAAGGTGGTGATGCTGGATGAGCCCACGTCCGGGATGGATCCCTCGGCCCGCCGGGCCACCTGGGACCTGCTGCAGAGCCAGAAGCCCGGACGCACCATCCTGCTCACCACGCACTTCATGGACGAGGCCGACCTCCTGGGCGACCGCATCGCCATCATGGCCGGGGGTGAGCTGCAATGCTGCGGCTCCCCACTCTTCCTGAAGAACAAGTACGGCGCCGGCTACCACATGGTCATCGTGAAGGACTCCCTGTGCAACGTGTCGGAGATCACGCGGCTGGTGAAGATGTACGTGCCCAACGCCACCCTGGAGAGCAGCGCCGGCGCCGAGCTCTCCTACATCCTGCCCAAGGAGAGCACCAGACGGTTCGAGCTGCTGTTCGCAGAGCTGGAGATCAACAGGGAGAAGCTGGGCATCGCCAGCTACGGGGCGTCCGTCACCACCATGGAGGAGGTCTTCCTCAGGGTGGGCAAGCTGGTGGACTCCAGTCTGGACATCCAGGCCGTGCAGCTTCCGGCACTGCAGTACCAACACGAGCGCCGCTCCCACGACTGGAGCACCGATGACGCCAGCAGCATCAGCGGCATGACGGACGTCACAGACTTCACAGACAGCGGCACGCTCATCTCCGAGGACTGTTCCAGCATCAAGCTCAACACAGGGGCCCGGCTGTACCTGCAGCAGTTCTACGCCATGTTCCTGAAGAGGGCTCTGTACAGCTGGCGGAACTGGAAGGTGATGGTGGCCCAGTTCTTGGTGCCCCTGGTCTTCACGGTACTGGCTCTGATTGTGGCACGGTCCTTCCCCGGGCCACATGACTCCCCCCCGCTGGGCCTGTCCCTCGACCACTACGGCTTCACCACCGTGCCCGTGGCGCTCGAACCCGGTGCCGGCCCCCTGGCTGCAGCCCTGGCTGGCAGCTATGTGGACGCCACGGCCTTCTTCAACAACCAGGGCTACCACACCCCTGCCACCGCGCTGCAGCTGCTGGACAACGCCCTGTACAGGCTGGTCGCCGGGCCCAACGCCTCCATCAGCATCCAGAACCACCCCATGCCCCGGAACGTCTCCGAGACCGCCCGTGACCAACTCATGGAGGGACAGACCGGCTTCGCCATTGCCATCAACCTGATGTACGGCATGGCCTCACTGTCCAGCACCTTCGCCCTGCTCCTGGTCACTGAGCGCGCCCTCAAGTCCAAACACGTGCAGCAGGTCAGCGGGGTCTACCTCTCCAACTTCTGGTTCTCCGCCCTGCTGTGGGACCTCATCAACTTCCTGCTGCCCTGCGTGCTCATGCTGGTGGTATTCAGGGCATTCGGAGTCCAGGCCTTCACGCAGGACACCCACCTGGTGGACGTGatgctgatgctgctgctgtacGGCTGGGCGGTCATCCCCCTCATGTACCTGCTCAGCTTCCTGTTCTCCACAGCCGCCACCGCCTACACCCGCCTCACCATCTTCAACATGATCAGCGGCACCGCCACCTTCCTCACCGTCGCCATCATGGCCATCCCCGAGTTGAAGCTGGTGCACCTCTCCAAGATCCTGGACAAAGTGTTCCTGATCTTTCCCAACTACTGCCTGGGCATGGCCTTCAGCGAGTTCTACCAGAACTACGAGCTGCTGGAGTTCTGCACCTCCAGCTCCATGGCGAAGATGATCTGCAATTTTTACAACCTCACCTACCAGGAGAATTACTTTGCCTGGGAGGCTCCCGGCGCGGGCCGCTTCCTGGTCGCCATGTCCATCCAGGGTGTGGTCTTCCTTGTACTCCTCTTCGTCATCGAGCTGCAGATCGTCCGCACCCTGCGCCGGCTCTGTGGCACCCTCTGCCGGAGACGCAAGAAGGTGCCCGACGTGACCGGCGCCGCCCTGCAGCCGGAGGACCGGGACGTGGCAGAGGAGAGGAAGCGTGTGCTGGAGTGTCAGCCGGCGGTGGAGTCCATGCTGGGCAGCCCGCTGATCCTGCAAGAGCTGAGCAAGGTGTACAGCAGTGGGGAGGGCCTGCTGGCGGTGGACCGGCTGTCCCTGGCCGTCGGTAAGGGCGAGTGCTTTGGCCTGCTGGGCTTCAACGGGGCCGGGAAGACCACCACCTTCAAGATGCTGACCGGGGACGAGACGGTGACGGGCGGAGACGCCTACATCGACGGCTACAGCATCCTGAGGGACATCAAGAAGgtcCAGCAGCGGATTGGCTACTGCCCCCAGTTTGATGCGCTGCTCGACCACATGACGGGCCGCGAGACGCTGAGCATGTACGCGCGGCTGCGGGGCATCCCGGAGAAGTACGTGGCCGGCTGCGTGGAGAACGTGCTGCGCTCTCTCCTGCTGGAGCCGCACGCCGACAGGCTGGTCCGCAACTACAGGAGACTGCTGTGGGACGCGGTGACCCGGACTCGGGAGTCTGGAAAGGCCATCATCATCACCTCGCACAGCATGGAGGAGTGCGAGGCGCTGTGCACTCGGCTGGCGGTGATGGTGAATGGGCAGTTCAAGTGCCTGGGCAGCCCCCAGCACCTCAAGAGCAAGTTCGGCAGCGGCTACACCCTGCTAGCCAAGGATGAGCACCAGGGCATGGTCCACTACCACCTGACTGACAAGGCCCTCACCTGGGCACAGGTGTTCGGGACCATGGAGGCGGCCAAAGAGAAGTACGGCATCGAGGACTACTGCGTTAGCCAGATCTCCCTGGAGCAGGTGTTCCTGAGCTTCGCCCAGTTCCAGCACTGCGCCGAGGGGAGGAGGAAGTGAGCCGCAgggcccccctccccccccgccCGCCCGCCCGGGAGGCAGCTACACTCTCCTCTCAGGTCTATGAACCCCCCAGGGATGACCCCAGGCTCTCGGCAGGGCTTTCAAAACACTTTGTACAAGACATACCGGACCAGACGAGCGGCAGAGAGGCGTTGGGTGGTGTGGTATGTCCTGGGACTTGCACCTTCTTCTGTACCAAGTTTGACTTCTCGTTGTTGCACCTTCGTTTCTGGAGTTTTCGGTATTTATCACTGAAGTCCAAGAGGACAGACACTCGAGCCTATAACTGTAACTGACTGACAGGGTCTCTGTGTTTCATTGGTCCATTTGTGAACGTCTTTATTTTATggttgtacattaaaaaaaaaaaaacctaataatattttgttgcgGTTCCATCTGGTTCTTATTGTGGTCTTCAGTCTCAGGAGAGTAGAGAGGgtcccccccccatccccccgaTTAACTGAAACGGGGAATGGCGTTGCTCAAGTCAGGTACTTTAAACCATAGATGTAATCTCCTTCTGAGGGGGGCAGTATTGCTCTGCCAGATTGTGCTCCTATTCTGAGTTTGCATGCCCGTCCCAAtctcagttttctgttttttacgAAGTGTATAGAttccaaaatgtaaatagtATGAAAGTCGGCCCGTGTTACGAGAGGCACGGACTCGGCACAGAAAATGCATGGTGACCTTCAGTTCTTCATCCATTGTGTGAAGCATGAGAGATGAACGCACAAGACCGATGCCTGCCAGACAGCCAACCAACAGGAACGTCTAGTTATCGTTTAGTCTTTTAGCGTAGAGAGCGCGGAGTCGTGTCGAGCGAAGGAGGTGCTTTGTAGACGAGCATTACTGCTTCTGCCACCGTCCCCCGTCCCCACTCTCTCCAGGAGCTGCTGAAGCCACAAGTAAGCAGGTGTGACTGTGGTGGGATGTACCTCGACTATATTGTGATTGTTGGCCCCCAGATGGGCCCCTCCTGTGCAGACCAGGCCATCTACTGGGAACTTGATCCCATTCCTGCAGAGCAGCTGAACGTTAGACATCCGTCCACACACAcgctctcactcactctctctctcacacacacacacacacacacacacacacacgctctcactcactctctctcacacacacacacacacgctctcactcacacacacacacacacacacacacacacacaNNNNNNNacacacacacacacacacacacatg

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K05643 ABCA3; ATP-binding cassette, subfamily A (ABC1), member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143220 lncRNA downstream 21624 1985149 ~ 1985721 (-) False AMCG00018113
TU143216 lncRNA downstream 23196 1983652 ~ 1984149 (-) True G114363
TU143140 lncRNA downstream 128970 1842143 ~ 1878375 (-) False G114304
TU143139 lncRNA downstream 160574 1751896 ~ 1846771 (-) True G114304
TU143110 lncRNA downstream 472360 1533456 ~ 1534985 (-) True G114286
TU143345 lncRNA upstream 339453 2368430 ~ 2375735 (-) True G114456
TU143460 lncRNA upstream 607524 2636501 ~ 2647811 (-) False AMCG00018142
TU143462 lncRNA upstream 639483 2668460 ~ 2668661 (-) True G114554
TU143599 lncRNA upstream 967058 2996035 ~ 2998258 (-) True G114658
TU143625 lncRNA upstream 1048064 3077041 ~ 3077760 (-) True G114681
AMCG00018113 mRNA downstream 16790 1986296 ~ 1990555 (-) True AMCG00018113
AMCG00018107 mRNA downstream 28526 1975197 ~ 1978819 (-) True AMCG00018107
AMCG00018108 mRNA downstream 36855 1947989 ~ 1970490 (-) True AMCG00018108
AMCG00018103 mRNA downstream 133146 1860513 ~ 1874199 (-) True AMCG00018103
AMCG00018099 mRNA downstream 237411 1756664 ~ 1769934 (-) True AMCG00018099
AMCG00018110 mRNA upstream 3746 2032723 ~ 2046992 (-) True AMCG00018110
AMCG00018109 mRNA upstream 38669 2067646 ~ 2068026 (-) True AMCG00018109
AMCG00018112 mRNA upstream 43576 2072553 ~ 2081057 (-) True AMCG00018112
AMCG00018118 mRNA upstream 76628 2105605 ~ 2110667 (-) True AMCG00018118
AMCG00018117 mRNA upstream 131423 2160400 ~ 2162382 (-) True AMCG00018117
TU143224 other downstream 709 1985149 ~ 2006636 (-) False AMCG00018113
TU142989 other downstream 1080606 923507 ~ 926739 (-) False AMCG00018077
TU142990 other downstream 1080606 923507 ~ 926739 (-) False AMCG00018077
TU142760 other downstream 1564921 441085 ~ 442424 (-) True G114021
TU143313 other upstream 252723 2281700 ~ 2288862 (-) True G114430
TU143456 other upstream 580168 2609145 ~ 2609479 (-) True G114549
TU143816 other upstream 2031834 4060811 ~ 4064248 (-) False G114838
TU144050 other upstream 2557085 4586062 ~ 4588297 (-) True G115020
TU144068 other upstream 2617600 4646577 ~ 4651612 (-) False AMCG00018220

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00049634 False 5112 mRNA 0.54 30 NC_007114.7 12593558 ~ 12698292 (+)
grasscarp (Ctenopharyngodon idella) CI01000208_00622771_00646633.mRNA True 3929 mRNA 0.53 20 CI01000208 622771 ~ 647166 (+)