RNA id: AMCG00018109


Basic Information

Item Value
RNA id AMCG00018109
length 381
RNA type mRNA
GC content 0.67
exon number 1
gene id AMCG00018109
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2067646 ~ 2068026 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCTGCTCCTCCGGACCGCTGGCCTGCCGGCAGCCCCATCCCCTGGAAGCCCAGACGGCGGCCCAGGATGGGGCACCCAAGCCCCCCGAAGCGCTGTCCACCATGGAGCGGCTAGCGCTGGCCACGGGTGGCACGGAGAAGTCCTGGTACCGCTGCATCTTCCCCTTCGGCATCATCTCGCTGGTGATCGGCGTGGCCGGCACCGGGGTCACCTTCTACTTCGACAACCTGCCGCAGATCAAGGTGGTGTCCGTggtgctgctgggcctgggcCTGGCGCTGGTGGCCATGGCCACAGCCTGCTGGCGGGTGCACAAGCACAAGCGCAGGAAAAAGAAGGAAGGGGGCTCCTTCAGCTCGGAGCAGTGCGCTCTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143220 lncRNA downstream 81925 1985149 ~ 1985721 (-) False AMCG00018113
TU143216 lncRNA downstream 83497 1983652 ~ 1984149 (-) True G114363
TU143140 lncRNA downstream 189271 1842143 ~ 1878375 (-) False G114304
TU143139 lncRNA downstream 220875 1751896 ~ 1846771 (-) True G114304
TU143110 lncRNA downstream 532661 1533456 ~ 1534985 (-) True G114286
TU143345 lncRNA upstream 300404 2368430 ~ 2375735 (-) True G114456
TU143460 lncRNA upstream 568475 2636501 ~ 2647811 (-) False AMCG00018142
TU143462 lncRNA upstream 600434 2668460 ~ 2668661 (-) True G114554
TU143599 lncRNA upstream 928009 2996035 ~ 2998258 (-) True G114658
TU143625 lncRNA upstream 1009015 3077041 ~ 3077760 (-) True G114681
AMCG00018110 mRNA downstream 20654 2032723 ~ 2046992 (-) True AMCG00018110
AMCG00018111 mRNA downstream 38669 2007345 ~ 2028977 (-) True AMCG00018111
AMCG00018113 mRNA downstream 77091 1986296 ~ 1990555 (-) True AMCG00018113
AMCG00018107 mRNA downstream 88827 1975197 ~ 1978819 (-) True AMCG00018107
AMCG00018108 mRNA downstream 97156 1947989 ~ 1970490 (-) True AMCG00018108
AMCG00018112 mRNA upstream 4527 2072553 ~ 2081057 (-) True AMCG00018112
AMCG00018118 mRNA upstream 37579 2105605 ~ 2110667 (-) True AMCG00018118
AMCG00018117 mRNA upstream 92374 2160400 ~ 2162382 (-) True AMCG00018117
AMCG00018123 mRNA upstream 135351 2203377 ~ 2209563 (-) True AMCG00018123
AMCG00018122 mRNA upstream 146846 2214872 ~ 2220701 (-) True AMCG00018122
TU143230 other downstream 62 2006906 ~ 2067584 (-) False AMCG00018111
TU143224 other downstream 61010 1985149 ~ 2006636 (-) False AMCG00018113
TU142989 other downstream 1140907 923507 ~ 926739 (-) False AMCG00018077
TU142990 other downstream 1140907 923507 ~ 926739 (-) False AMCG00018077
TU142760 other downstream 1625222 441085 ~ 442424 (-) True G114021
TU143313 other upstream 213674 2281700 ~ 2288862 (-) True G114430
TU143456 other upstream 541119 2609145 ~ 2609479 (-) True G114549
TU143816 other upstream 1992785 4060811 ~ 4064248 (-) False G114838
TU144050 other upstream 2518036 4586062 ~ 4588297 (-) True G115020
TU144068 other upstream 2578551 4646577 ~ 4651612 (-) False AMCG00018220

Expression Profile