AMCG00018118


Basic Information

Item Value
gene id AMCG00018118
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2105605 ~ 2110667 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018118
ATGCGTCCCGAATCCCGCACATGCGCTCTGTGTCGGGTGTCTGCATGTCATGCGCAGTCCGCGGTCCCTGCCAGTGCTGGACTCATGATGGCGTCCTCTGCGGCTCGGTGCTCCACACGCTGGATCTCGGCGGCGGTGTCCTCTGGCCGGCGCCGGGGCTGCTCACGACTCGCCTCGGCCCTCTCGACCGTCCCTCGCCCCCTCCCTGCCCCGGGAGCGCCCCGGTACCGTCCGGGATGGAGCGGCATCGGCGGGGGCGCCGGGAGTGTGCTGACATTGAGACCCGTGACAGGCGTGCCACGTGTCATCGGTGCGGCTGGCTTCCACACCAGCGCCCCTGCCGCCAACAAGCAGGACTTCTACCAGGTCCTGGGGGTCCCCCGCTCCGCCACCCAGAAGGATATCAAGAAGGCCTACTACCAGCTGGCCAAGAAGTACCACCCCGACACCAACAAGGACGACCCTCAGGCCAAGGAGAAGTTTGCCCAGCTGGCGGAGGCTTATGAGGTGCTGAGCGATGAGGTGAAGAGGAAGCAGTACGACACGTACGGCACGGCCGGCTTTGACCCCGGACAGGCGGGCGCCGGGGCGGGCAGCCAGCAGTTCTGGCGCGGGGGGAGCAGCGTGGACCCGGAGGAGCTCTTCCGCAAGATCTTCGGGGAGTTCTCCGGCTCCCGCTTCGGGGACATGAACTCCATCTTCGACCAGCCGCAGGAGTACATCATGGAGCTGACGTTCAACCAGGCTGCCAAGGGTGTGAACAAGGAGATCTCGGTGAATATCGAGGACAGCTGCCAGCGCTGTGACGGCAAGGGCAACGAGCCGGGCACCAAGCTGCAGCACTGCCACTACTGCAACGGCACCGGAATGGAAACGATAAACACCGGGCCGTTCGTGATGCGCTCAACCTGCCGGCGCTGCGGGGGGCGGGGCTCCGTGATGACCACGCCCTGCCTGTCGTGCCGGGGCACGGGCCAGACCAAGCAGAGGCGCACCGTCATGGTGCCGGTGCCGGCAGgcGTGGAGGATGGCCAGACGGTGCGAATGCCCGTCGGGAAGAAAGAAATCTTCATCACGTTCCGGGTCCAGAGGAGCCCCGTGTTCCGGAGGGACGGAGCCGACATCCACTCGGACCTCCACATCTCCATCGGTCAGGCCATCCTGGGGGGCACCGCCCGCGCGCAGGGGCTCTACGAGACCATCAACGTCACGATCCCGGCCGGCTCCCAGGGGGACCAGAGGATCTGCCTGTCCGGGAAGGGGATCCCTCGGGTGAACAGCTACGGATACGGAGACCACTACATCCACATCAAGATCCGTGTGCCCAAAAACCTGACGGACCGGCAGCGCGCTCTGCTCATGAGCTATGCGGAGGACGAGACCGACGTGGAGGGGACCGTCAATGGAGTCACCAACACCACTGCCGATGGGGGAGCCAGGGGGGCGCGCTCTGAGGCAGGGCAGGACAGGCCTGAGGAGGGGCAGGACAAAGAGCAGGGGCAGGACAAGGAGGAGGGCTTCTTCTCCAAACTAAAGCGAATGGAAGCGGTACACCGGGAACTAGGGGAACCGGGAGCGCCGGGTCCGGTTCTCGGGGTGACGGGGGACGTGGAATTTGAAGGCAAGCTGCCGAGGAACCCGCTGAACAAGTGGCCGGTCTGCCTGACGGGGCTGCAGGGAGCGCGGGAGCGGGACAAGAGCGTACGACTTTGCGCATCTGCTCACGAATACATCCTCCACCCAAGACCGCTAACACAGGGCTGCACCACACGGACGATCCCTTCAGTGCTGCGCAGCCACCGGACCCCACACGGAAACTACATTCACAGGGTTCTCCACCAGCTCGTACCCGCGTCCAGGAGTTCACTACATGTTTTCCCTCCAGTGTTTTTCATGTGTTCGTTATAA

Function

GO: NA

KEGG:

id description
K09504 DNAJA3; DnaJ homolog subfamily A member 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018118 True 1908 mRNA 0.65 12 2105605 2110667

Neighbor

gene id symbol gene type direction distance location
AMCG00018112 NA coding downstream 24548 2072553 ~ 2081057 (-)
AMCG00018109 NA coding downstream 37579 2067646 ~ 2068026 (-)
AMCG00018110 LOC107683020 coding downstream 58613 2032723 ~ 2046992 (-)
AMCG00018107 LOC103024569,LOC104933647,LOC105905426,LOC108424881 coding downstream 126786 1975197 ~ 1978819 (-)
AMCG00018108 adap1,LOC106601846,LOC105005621 coding downstream 135115 1947989 ~ 1970490 (-)
AMCG00018117 NA coding upstream 49733 2160400 ~ 2162382 (-)
AMCG00018123 NA coding upstream 92710 2203377 ~ 2209563 (-)
AMCG00018122 NA coding upstream 104205 2214872 ~ 2220701 (-)
AMCG00018137 NA coding upstream 291631 2402298 ~ 2408795 (-)
AMCG00018135 LOC107566046 coding upstream 300351 2411018 ~ 2420035 (-)
G114363 NA non-coding downstream 121456 1983652 ~ 1984149 (-)
G114304 NA non-coding downstream 227230 1751896 ~ 1878375 (-)
G114286 NA non-coding downstream 570620 1533456 ~ 1534985 (-)
G114273 NA non-coding downstream 591963 1512993 ~ 1513642 (-)
G114264 NA non-coding downstream 836789 1268293 ~ 1268816 (-)
G114456 NA non-coding upstream 257763 2368430 ~ 2375735 (-)
G114554 NA non-coding upstream 557793 2668460 ~ 2668661 (-)
G114658 NA non-coding upstream 885368 2996035 ~ 2998258 (-)
G114681 NA non-coding upstream 966374 3077041 ~ 3077760 (-)
G114720 NA non-coding upstream 1029428 3140095 ~ 3141310 (-)
AMCG00018111 abca3,LOC102775623,LOC102307646,LOC107742093 other downstream 38021 2006906 ~ 2067584 (-)
AMCG00018113 NA other downstream 98969 1985149 ~ 2006636 (-)
AMCG00018077 NA other downstream 1178866 922278 ~ 926739 (-)
AMCG00018074 NA other downstream 1305134 777387 ~ 800471 (-)
G114021 gna12,gna12a,LOC107674729,LOC107753491,LOC107703403 other downstream 1663181 441085 ~ 442424 (-)
G114430 srl,LOC107553668,LOC107661647,LOC107718567,LOC107695714 other upstream 171033 2281700 ~ 2288862 (-)
G114549 LOC104962440 other upstream 498478 2609145 ~ 2609479 (-)
AMCG00018142 NA other upstream 525834 2636501 ~ 2647811 (-)
G114838 NA other upstream 1917349 4028016 ~ 4087031 (-)
G115020 NA other upstream 2475395 4586062 ~ 4588297 (-)

Expression


Co-expression Network