AMCG00018117


Basic Information

Item Value
gene id AMCG00018117
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2160400 ~ 2162382 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018117
ATGAAGCTCTTCCcactcctgctcctgctccccGTGGCCCTTGTGCACTCCTGTCCCGACGGCTGCACGTGCCTCTATGGGGAAAACATCTTCTGCACCCAGCGGAGGGCGAGCTCCATGCCCCGGAACGTCCCCGAAAGCACGCAGAATCTCTACCTGTTCCAGAACGGCATCACCTCTCTGCGCACAGACGATTTCTCCACCCTGGCCGGCCTGGTACTCCTGGACCTCTCGCAGAACCGCATCTCCGAGCTCCCCGGCCAGGTGTTCGAGCCCCTCGCTTCCCTGTGCAACCTGGACCTGTCGGCCAACCAGATCACCGAGATCTCCAAGGGGACCTTCGCTGGCCTGCACATGCTGGAGCGCCTCTATCTGCACGGCAACCGCATCCAGAACATCCACACGGCCGCCTTCGATGGCCTGGACAGGTTGCTGGAGCTGAAGCTGCAGGAGAATCAGATCACGGTGCTGCCTGCCCTCCGCATGCCCAGCCTCCTGCTCCTTGACATCAGCTTCAACAAGATCCCCTCGCCACGCCCTGAGAACCTAGAGCTGGACAACCTGGAGTCCCTGAAGATGTCGGGGTTGGGCCTCAGCTATCTGGATGAGAACCTGATGAAGAACCTGGGGAACCTTCACGACCTGGACCTCTCCAAGAACCAGCTGAAGGCCGTCCCTGCAGCCCTCAAGCAATGCAGAGGGCTGATCACTCTGAATCTGGCGGGCAACCCTCAGGTGGCCCAGCTGAAGAAGGAGGACTTCCAGAACTTGGAGAACCTGCAAGAGCTGAACCTCAGCAACCTCAACCTTCAGGGCATCCCCGAGGGTTTGCTCCAGCTCTTCCCCCGGTTGCAGACCCTCTCGGTGGCTGAAAACCCCTTCAACTGTGTGTGCCCCCTGGCCTGGTTCCCCCTGTGGGTGCGTAGCAGCCAGGTGGAGCTTGCCCGGATCGAGGAGACGCGCTGCCATTTCCCCCCGCTCAATGCCGGGAAGGTCCTCAAaaggctggagcacaaggacttTGGATGCCCCACCACCACGACCACGACCACCACCACAGTGAAGACGAGCCGCCCCGAGCCTCCTGTCGTCACCACCCTGCCTACGACAACGCTGCCCACCCCATCGCCCAGCCAAAGCTCGATGGACAATGCCGGCAGCACTCCTCCCCCCGACACGCCCGAGCTCAGCAGCAAACCGGACCCCAAGGTGCGCTTCTGCCCACCCAACATCTGTCTGAATGGGGGCACCTGTCAGCTGGACCACAAGGGCCACGTGGAGTGCACCTGCCCCCCCAGCACCAGGGGAACCTACTGCGAGAGCAAGGAGGACACGACGCTGGGCATCTCCACTCCGGCTCTCACCACCGAGCCCGCCATCCGCTCCAGAAAGGCCACCAGCACCTCCATCCTGGTGGACCTGCACCGCTACATCCAGGCCCGGCCGCAGCTCCGAGGAATCCGGCTCACCTACAGGAACCTGTCGGGTCCAGACCGACGGCCCATGCAGCTCAGCGTTCCCGCCTCCTACCCGGAGTACACGCTGCGGGGGCTCCGGCCCAACTGCACCTACCACATCTGCGCCAGCCCCCTGGGGGAGCCGGAGACAGAGGACAGCTTCTGCACTGAGGCCCAGACCTCCAGCCAGCAGCTGCACCACTCCCCCATTACGCAGTCCCAACACGGGCAGCTCACCACCATGGTGGTCCCCTTGGTGTCTGTGGTCTTGGTGGTAGTGGTGGCTGTGGCCGGGGGCATCTACTATGTACGCAGGAAACGGGCGAAAGGCCACCCAGACCTTGGCGCTGACCCCTGCCCCCTGGAGCTGGAGGGGGTCAAGGCTTGCCTGGAGAACGGGACGCTGCCACAAAAGGTGCCCGACGTCTCACAGTCCCCGAATGGGCTGGAGTACGAGGTCCCACTGATGCAAGGGCACGGGCCGGCCAACAACAACGTGGCGGCCCTGAAGCCCTCGTACTTCTGA

Function

GO: NA

KEGG:

id description
K24500 VASN; vasorin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018117 True 1983 mRNA 0.63 1 2160400 2162382

Neighbor

gene id symbol gene type direction distance location
AMCG00018118 NA coding downstream 49733 2105605 ~ 2110667 (-)
AMCG00018112 NA coding downstream 79343 2072553 ~ 2081057 (-)
AMCG00018109 NA coding downstream 92374 2067646 ~ 2068026 (-)
AMCG00018110 LOC107683020 coding downstream 113408 2032723 ~ 2046992 (-)
AMCG00018107 LOC103024569,LOC104933647,LOC105905426,LOC108424881 coding downstream 181581 1975197 ~ 1978819 (-)
AMCG00018123 NA coding upstream 40995 2203377 ~ 2209563 (-)
AMCG00018122 NA coding upstream 52490 2214872 ~ 2220701 (-)
AMCG00018137 NA coding upstream 239916 2402298 ~ 2408795 (-)
AMCG00018135 LOC107566046 coding upstream 248636 2411018 ~ 2420035 (-)
AMCG00018134 NA coding upstream 281325 2443707 ~ 2449697 (-)
G114363 NA non-coding downstream 176251 1983652 ~ 1984149 (-)
G114304 NA non-coding downstream 282025 1751896 ~ 1878375 (-)
G114286 NA non-coding downstream 625415 1533456 ~ 1534985 (-)
G114273 NA non-coding downstream 646758 1512993 ~ 1513642 (-)
G114264 NA non-coding downstream 891584 1268293 ~ 1268816 (-)
G114456 NA non-coding upstream 206048 2368430 ~ 2375735 (-)
G114554 NA non-coding upstream 506078 2668460 ~ 2668661 (-)
G114658 NA non-coding upstream 833653 2996035 ~ 2998258 (-)
G114681 NA non-coding upstream 914659 3077041 ~ 3077760 (-)
G114720 NA non-coding upstream 977713 3140095 ~ 3141310 (-)
AMCG00018111 abca3,LOC102775623,LOC102307646,LOC107742093 other downstream 92816 2006906 ~ 2067584 (-)
AMCG00018113 NA other downstream 153764 1985149 ~ 2006636 (-)
AMCG00018077 NA other downstream 1233661 922278 ~ 926739 (-)
AMCG00018074 NA other downstream 1359929 777387 ~ 800471 (-)
G114021 gna12,gna12a,LOC107674729,LOC107753491,LOC107703403 other downstream 1717976 441085 ~ 442424 (-)
G114430 srl,LOC107553668,LOC107661647,LOC107718567,LOC107695714 other upstream 119318 2281700 ~ 2288862 (-)
G114549 LOC104962440 other upstream 446763 2609145 ~ 2609479 (-)
AMCG00018142 NA other upstream 474119 2636501 ~ 2647811 (-)
G114838 NA other upstream 1865634 4028016 ~ 4087031 (-)
G115020 NA other upstream 2423680 4586062 ~ 4588297 (-)

Expression


Co-expression Network