AMCG00018107 (LOC103024569,LOC104933647,LOC105905426,LOC108424881)


Basic Information

Item Value
gene id AMCG00018107
gene name LOC103024569,LOC104933647,LOC105905426,LOC108424881
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 1975197 ~ 1978819 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018107
ATGCCGCGGATGACCGGAGGGGCGCTGCGTCGTAAAGCGTCAGCCCGGGCCAGCAGTTACAACGTCATCAGCCTGCGCCGTCGGGGGAAGATCATTTTTTACTACGGGAAAGAtGACCGCTCCGAGGACAAGCCGAAGGAGCGCGGGAAGGAGAAGACGGGCACGAAGGAGGCCGGCGGGGACAAGGAGCGGGGCAGAGAGAAGGGCCGCAAGCGCCGCAGCGCGTCCAcagggagcagcagcagccgCGGCTCCAGCTCGACCTCCGCGTCCAGCCGCTCCGGCTCGTCCTCCTCGTCCcgcagctccagcagcagcagctcctccgGCTCGCCCAGCCCCGGCCGCCGCCGCCATGACAACCGGCGCCGCTCGCGCTCAAAGTCCAAGTCCCTGAAGAGGGacgagaaggagaggaagaggaggagcccGAGCCCCCGGCCCACCAAGGTCCACCTCGGCCGGCTCACCAGGAACGTCACCAAAGATCACATCATGGAGATCTTCTCCACCTACGGGAAGATCAAGATGATCGACATGCCGGTGGACCGGCTGCATCCCCACCTGTCCAAGGGCTACGCCTACGTGGAGTTCGAGACGGCGGACGAGGCGGAGAAAGCCCTCAAACACATGGATGGAGGTCAGATCGACGGCCAGGAGATCACAGCCACGGCCGTGCTGGCCCCACGGCTACGCCTCGCCCCCCGCCGCCTCACGCCCCCGCGCAGGatgccccccccgcccccggtGTGGCGCCGGACCCCCCCGCGCATGAGGAGGAGgTCCCGCTCCCCGCGCCGCCGCTCACCCGTGCGCCGGAGATCTCGCTCCAGGTCACCGGGCCGGCGCCGGCACCGCAGCCGCTCCAGCTCCAACTCCTCGCGGTAGACAGCGGGCCCCTCCCTCTCTGCTGCGGCGGCTCCGGCGAGAAACGGGCCGTGGGTTAGAACTGTGCGGGGTTAACCTCGGCATCAGACCACGGGCCGTCCAGGGTAGCTAATAGATCACAGATTCTttcaagattgttttttttgtgtatattttttttttgtcctcgTTTTAATACAACCAGCATAGGGACTCGAGAATTGTAGACGCCCCTTTTGCTTCTCGTGATTTCAGGGCTTTTTCCACCTCCACTCTGCTAATTTGATCTCCCATCGTTGGGTTCTTTCGTTCGAGCAAAATCTCCAGCTTCTCTGGTTTCCAGGTGCTGCAGGTCGTACCACCGGGTCCGTGGCTTGATCTTCCTCCGACTCCTTTGTACCGTAGTATTGTACATAATCGAAGGTCtcatgtgattgttttttatatatatatatacacacacacacgcattcacacacacttcagGTTTTGTTATTGCAGTTCTTACCCCCCTAGGAGCGCTCTCTTCTAGTGTTCCTAGTGATGTagaatctttttaaaatgtcatgttgttttgggggagatttttgttttggaaataaaatacatgaaaagtcAAAATGAACTTCATTATTGACTATTTCATCCTGAAACAGAA

Function

NR:

description
RNA-binding protein with serine-rich domain 1-like

GO: NA

KEGG:

id description
K14325 RNPS1; RNA-binding protein with serine-rich domain 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018107 True 1525 mRNA 0.59 6 1975197 1978819

Neighbor

gene id symbol gene type direction distance location
AMCG00018108 adap1,LOC106601846,LOC105005621 coding downstream 4707 1947989 ~ 1970490 (-)
AMCG00018103 lfng,LOC103392616,LOC106537334,LOC101169038 coding downstream 100998 1860513 ~ 1874199 (-)
AMCG00018099 NA coding downstream 205263 1756664 ~ 1769934 (-)
AMCG00018101 NA coding downstream 226177 1748745 ~ 1749020 (-)
AMCG00018098 NA coding downstream 226616 1746150 ~ 1748581 (-)
AMCG00018110 LOC107683020 coding upstream 53904 2032723 ~ 2046992 (-)
AMCG00018109 NA coding upstream 88827 2067646 ~ 2068026 (-)
AMCG00018112 NA coding upstream 93734 2072553 ~ 2081057 (-)
AMCG00018118 NA coding upstream 126786 2105605 ~ 2110667 (-)
AMCG00018117 NA coding upstream 181581 2160400 ~ 2162382 (-)
G114304 NA non-coding downstream 96822 1751896 ~ 1878375 (-)
G114286 NA non-coding downstream 440212 1533456 ~ 1534985 (-)
G114273 NA non-coding downstream 461555 1512993 ~ 1513642 (-)
G114264 NA non-coding downstream 706381 1268293 ~ 1268816 (-)
G114213 NA non-coding downstream 808704 1162890 ~ 1166493 (-)
G114363 NA non-coding upstream 4833 1983652 ~ 1984149 (-)
G114456 NA non-coding upstream 389611 2368430 ~ 2375735 (-)
G114554 NA non-coding upstream 689641 2668460 ~ 2668661 (-)
G114658 NA non-coding upstream 1017216 2996035 ~ 2998258 (-)
G114681 NA non-coding upstream 1098222 3077041 ~ 3077760 (-)
AMCG00018077 NA other downstream 1048458 922278 ~ 926739 (-)
AMCG00018074 NA other downstream 1174726 777387 ~ 800471 (-)
G114021 gna12,gna12a,LOC107674729,LOC107753491,LOC107703403 other downstream 1532773 441085 ~ 442424 (-)
AMCG00018113 NA other upstream 6330 1985149 ~ 2006636 (-)
AMCG00018111 abca3,LOC102775623,LOC102307646,LOC107742093 other upstream 28087 2006906 ~ 2067584 (-)
G114430 srl,LOC107553668,LOC107661647,LOC107718567,LOC107695714 other upstream 302881 2281700 ~ 2288862 (-)
G114549 LOC104962440 other upstream 630326 2609145 ~ 2609479 (-)
AMCG00018142 NA other upstream 657682 2636501 ~ 2647811 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_038332 rnps1 coding NW_008805347.1 KN149698.1 88501 ~ 102259 (+)