RNA id: TU143230


Basic Information

Item Value
RNA id TU143230
length 4091
RNA type TUCP
GC content 0.51
exon number 3
gene id AMCG00018111
representative False

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2006906 ~ 2067584 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

accctccccaccTCACACCCACCAGCCGGGCTCTGAAGACTGTGGAAGACCCCAGAGCACCCACGTGGAAGGGGGGGACCGAGAGTTTGCTAGCACAGCCGGGATGTTAAAGGAGAGCTGACTGTCTGTGGGGAGACGTGTGTCCCGTGCCTCGCGCTCCCGTCCTCTCGCTGGATTCCAGTCCCCCGTGCGCTCTGGACCCGGGGGGGGAGCACTGCAACACTGAAGAGGATGCCCCAATGCCCAACTGCCTTTTCCAGAGAGAACAGCTCTGTGTGGATCCTCTtgttacagtttaaaaacacaggcttcccatcacccccccaccaacacaGCACTGGAGTACGGAGAGAGCCAGCACTGTAATCCTATCTGCGTGTGAGGGAAGAGTCCGGTGACACCACAGGCATTTGGCAACAGGACACTAGAAATGCGAGTGGGacacaaactttttttcttcttctgtctgtgtgctgctcTCCAACAGCCAGGGAGGCAACAGTGCCCTGTCAGCCACGCTCCCTTTCCCCAACGCCAGTGCAGCAGTGAATCCCACTCTGAGAAGTGAGCCGGCTCAAGAGAGAGCACCGGAGGGCAGCCACATGACAGGGACGGGCCGCCCTCTCCTGGTGTCAGCCGGGCTGCCGCACCAGTGCCCAGAGGAGGGTGAAGAGATCAGACTGCACGAACTCTGGCCGTCCCCTGGCAGTGGCTCGGAGCTGCTGGCTGGCCTGAATGTGACCGCAGTGCCTTGGTCTGTGCTGAACCGAGGGGAGCAGATCCTAACCTGGCCTGGCTCTTTGTGTTCCTCTGCCGGCTCGCTGACCACCATCGCCGCCCCGGCCGCAGGTGGTGAACTCACGGCGGAGGGCACTCTGCTAACAAAAACCGTAACGACACGGAACCGAGGGCCTTCTCTTGTTTCCCTGAAAGGCTGCCAACCGCCCCTCTCTtccttttctctccttcttttcTTGTGGCGTGGAGCCcaaaaaaaggatttcaaaggggttttattttaaccttttgtGGTCTAATCTGTCCATGGTGCCGAGAACCGGCTCAGGCACAGAGATCCAGCTCAGGGACTTTGACAGGACAGAGCTCCGGATCGGACAGGTCTGCCGCGTTGTTTCCCTGTATGTGACACTGGAGTCTGGCGCGGCTCAAACCGCTCCGCGCTGCTCGTGACGCGGCCGTGTTTTCAAGTGCGAGAGAGTAAGTGTGTGGGGTCTGTGTGTGACGATCTGTGGATGGCCAGTTTACATACTCGTGTAATCCCAGTGGTATGTTCCTTTCTTgctgttgttgatttgtttttcatataattaaaaagcatattCAGTGAAGATATTTAGATGTGCATTAACCAGCAGGTATAACCCTTTTTAAGACCTTGTATAggacaataaaacatttaaaaaagctatGTCAGAATGTAACACCGTTTGCAAGTCCTTCTCCTCGGTGCTGCCGTACACTTTTGTCTGTGCTGTTCAGACTTGACGTAAATGTGTCTGTGTCCCAGCCAGAGTACCGCCGGTTCTGACCCAGGTAGGGTGCCGTTATGAGCACATTATAATACACGTTGTGTGTGGAGGCGAATAACATCAGAAAGCAGTGCATGGCAGGCAGTGGAGGTGATCAGTTGCTAATGAGCATTCACAGTCTGTATTGATTTTAACCATCCTGCGACATGCTGAATGGCTGATATTCCCAGAGACACGTGGGGAGGATGCTTTGGCTCATGATTCTGGAGAGAAAGGCTGCAGATTCCCTCCGGTTCCTCAAGCCTTTGAACAAAAGCAGACGTGTGGCAgtgggtttgtgtgtgaggTGCTAGTGCAGGGTAACGCTTCAGCGAAGTGAACCGCAATCAAAGCATGCGTCTTCAAACGGGACGCTGCAATGCCTGTGATTTGGTTGTAAACAGTGATGGAAAACCTTACTGAACTTCAcccaatttgttttttctccactaaatattgttgttgtggtttgcAAAAGTCAGTAGACCCCTATTTTTAGTTTGATAAAAACAGGCACAAACATATCGACAAATGCACTCCGTAAATCTTAAGCATAGCGAGCAGCTGGTGGTAAAGGGATTACGAGGGTCTGGTCTGCAGTGTTTCTCTCCTCTGACACATCATAGATGTTGCAATCCAATGAATTTAGTTTCCGTGCCTTTCTTCCTCagtgtattagtattattattatatagtagtacagtgtacatatatacacacaaagaaTGATGTCTGAGATCCCGTAGCCGGCCAGAGTACACACACCCTTCCCTCGGGCCGCTTTGCGTACCAGACTGTATGTTCACAGCTCATGGTTACCTCTCTCCTAAGCTCCTGCACGGGCGGCTCCTAATCAGCTCTGAACACGTGTGAATCCTAATCGGCAACTCCCCTGTATATTGCATTTGCTAAGTTTGTGCGATCCAAAatctttccttgtttttcattAGCTTTTTCCAACAAGCGTTGGAGGGTCAATGTCGGTGCCTCAGACAGACCTagagaacaaactaaaaaacatgctgctaattaaacaattagttCGGTGTCCTATCAAATTGCAGACGGAGGTGCTTATTAATCCGTGGTGGAGATAAACCCCAGTGGCAGAGAGGTTTTGTTCAAAGGCAGCCCCATCCACGGTGCAGGCTGTGAGGGGCGTGTCCCTGCATCTCATGCCTCGGTGTGTAGAATGAAGGGGAAATGGCCCAGCCGGGAAAATCACAGGGGCCTGGAAACCAGATGGAGCCGCAGGGCAGCAGCCCTGCTATTATCACACGGCTGCCGGTTTACGGAGGAGCTGCACCGAGCGCTCCCCCCCGCCAGACTCCCACTCGCCACCCCTGACGAGTCACTCTGGCAGCAGCTCTCTCCGACTGATAAGTGCCACACGGCCAGGTGCGATCGGAGCGGTGCTGCTTAACGCCGTGCTTCAGCAGAACAGTCTCTGTGGGCGTCCGAACGTACGTCGCACGCTGAGCCACCGTGTCGTGGACTTTCTGTatgtgtggaaaaacaaaacgctCCAAGGGCGGCTCGTCCTGCATGGGCCGACGGAAAAGCATCAGAACCTTCCCTCTCCTGGGCCGGCAGGGCGGGAGTTAACCGGCTGGCTCACGGCAGGCTGCTTTGTCtgcattcataaaaaataaaaaaagaagccCGGCAGCTCATTCAGAAAAAGAAGGCCTGTATGTGGTCTGAATGTTGTACTGCACACCTCTGTGTTGCGCTGCCGAGGAGAGCCGGACCTGCAGACGTGGCCTCTCAGCGGCCATCTGGGTTACTGGCCCTGATGAACTGCCAAGCGGCAGCTGAAGGCCAATGTCAAGAGACCGCGGCCCTGCTAATAGAATCGTATAAATACGGACTGTCGAAGGCCTCGCCAGGGAAGAGCCGTTAATTGTGCTTTCCGCTGGTGCTCTGGGTTCTTGAGAGAAAAGAGGggagagtaaaacaaaaaagacaacaacaacacggCATGGGAATGAGGATCAAATCACAGACGGCAGCTGCATCACAGACGGAGAAAGCAAGCAGGCGGGGATAGTTAAAGATAAGTCtgtacatacacagacacacactctctctctctctcacacacacacacacacacacacatgtgatGCTTTTATCTTTGTTCCCCACACTTCCAAATTGAGCGATACTGCAGCGTTCCCAGCTGATCACTAATTAACTCAATGCTACGGGGTGTTTTGTTCCTGCTGTCAGTAAGGGGATCCAAGTTGCCTACCAAGCAGGGGCTCCCCAAAGGAGCAGGTGTTTAAGGGGCCTTGTGTGGAGTTTCATGGTGGGCGTGGTTCTCTGTTAAACAGATACTGGATATTCCCAAGACCTGCACCTAGGAAACCGACTTGCATTGTGTAAAAATCAAGAAAACTTGAACTATTTATGGTCATGAAACCAACGGTGtactatattaaaacaaaagggaaTTACGATGTTGTAAACTAATGTACTGTACTATTGAACTAACCTTGTCTACTGTATCtgtcatgtatttgttttcttgtcattaaaaatgctttatgcAAATATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143220 lncRNA downstream 21185 1985149 ~ 1985721 (-) False AMCG00018113
TU143216 lncRNA downstream 22757 1983652 ~ 1984149 (-) True G114363
TU143140 lncRNA downstream 128531 1842143 ~ 1878375 (-) False G114304
TU143139 lncRNA downstream 160135 1751896 ~ 1846771 (-) True G114304
TU143110 lncRNA downstream 471921 1533456 ~ 1534985 (-) True G114286
TU143345 lncRNA upstream 300846 2368430 ~ 2375735 (-) True G114456
TU143460 lncRNA upstream 568917 2636501 ~ 2647811 (-) False AMCG00018142
TU143462 lncRNA upstream 600876 2668460 ~ 2668661 (-) True G114554
TU143599 lncRNA upstream 928451 2996035 ~ 2998258 (-) True G114658
TU143625 lncRNA upstream 1009457 3077041 ~ 3077760 (-) True G114681
AMCG00018113 mRNA downstream 16351 1986296 ~ 1990555 (-) True AMCG00018113
AMCG00018107 mRNA downstream 28087 1975197 ~ 1978819 (-) True AMCG00018107
AMCG00018108 mRNA downstream 36416 1947989 ~ 1970490 (-) True AMCG00018108
AMCG00018103 mRNA downstream 132707 1860513 ~ 1874199 (-) True AMCG00018103
AMCG00018099 mRNA downstream 236972 1756664 ~ 1769934 (-) True AMCG00018099
AMCG00018109 mRNA upstream 62 2067646 ~ 2068026 (-) True AMCG00018109
AMCG00018112 mRNA upstream 4969 2072553 ~ 2081057 (-) True AMCG00018112
AMCG00018118 mRNA upstream 38021 2105605 ~ 2110667 (-) True AMCG00018118
AMCG00018117 mRNA upstream 92816 2160400 ~ 2162382 (-) True AMCG00018117
AMCG00018123 mRNA upstream 135793 2203377 ~ 2209563 (-) True AMCG00018123
TU143224 other downstream 270 1985149 ~ 2006636 (-) False AMCG00018113
TU142989 other downstream 1080167 923507 ~ 926739 (-) False AMCG00018077
TU142990 other downstream 1080167 923507 ~ 926739 (-) False AMCG00018077
TU142760 other downstream 1564482 441085 ~ 442424 (-) True G114021
TU143313 other upstream 214116 2281700 ~ 2288862 (-) True G114430
TU143456 other upstream 541561 2609145 ~ 2609479 (-) True G114549
TU143816 other upstream 1993227 4060811 ~ 4064248 (-) False G114838
TU144050 other upstream 2518478 4586062 ~ 4588297 (-) True G115020
TU144068 other upstream 2578993 4646577 ~ 4651612 (-) False AMCG00018220

Expression Profile