RNA id: TU143816


Basic Information

Item Value
RNA id TU143816
length 2688
RNA type TUCP
GC content 0.45
exon number 3
gene id G114838
representative False

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4028016 ~ 4087031 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTTGAGGTAGTGGAAAGTTTATTTACAACCCAATAATCacaatgcaaaaaaagaaaagtaaagtaaagaaaaagatTACAAGTCTACTAATAATTTATCCCATTTGAAGCATGCAAACTACATAATCTACAGCACAATGAGCCAGAGGTATAACAATTTCTGAtacaaattgatttttttttttgttttgtttatttattttaaaaacctgaGTGGGAGTTTGAAGGAATGTTTTACAAAACGCTTGCTACTTTTGCACTGTAAACCactagcctttttttttttttttatgattttttttttttccttttagttttCTATCAAtactaacaaaaatacaaaataaacttgaaCCTCCACATGAAGGCATTTGCAGTTCAATAAAAGATTTCAAAAATGGATTTTTCCCCAAAAAGATGATAAAAGTTCGAAAGCTGCTGCTTAAGCACGCTCGCCCCGGATTCGCCGAGCCAGCTGGATGTCCTTGGGCATGATGGTGACTCTCTTTGCATGGATGGCGCACAGATTGGTGTCCTCAAACAGACCGACCAAGTAAGCCTCGCTGGCCCCTGAAGAGCCCCAATGGCTGCACTCTGGAACCTGAGGTCAGTCTTGAAGTCCTGCGCAATCTCTCTCACCAGGCGCTGGAAGGGAAGCTTGCGGATCAGCAACTCAGTGGACTTCTGGTACCGACGGATCTCTCTCAGAGCGACAGTTCCGGGCCTGATCTGTGAGGTTTCTTCACACCACCAGTAGAGGGCGCGCTTTTCCGGGCAGCTTTGGTGGCCAGCTGCTTCCTGGGGGCCTTTCCACCGGTGGATTTACGGGCAGTCTGCTTGGTACGTGCCATTGCGACTCAAGGCTTTCTAGAAACTAGAGAAGAGGGGAGAAGAAGTGGGGATTTTAAACGGTGTGTAAAACCATAAACCTGACTGCAAAGCAGCAACGTTGTATCTATTGTCTGAACAGCGCCAGCCCCGCAACACCAGCGTCACAGAGCGCACCCGATTGGGTCACCCAGCCCCGCCCACGCACTGACTGACAGGCGAGGGGACCAATCTCGACAACGCTGGACTCCAGAGGGACGCGATGACGATGCCCAAGCCACGCCCACGACATGACTGACAGGCGAGAGCGCACGGCCGCGCCTGCGCAGGACTCCGGAGGGACGCGATGACGcgagctggagcagcaggacAAGCTTTGCAAGGGGGcgaaaatacacacatactagACATGAGCACAAAATGGCGGCTTCGCAAATgatccaaaacaacaaaatctacAGCGTTTGCAGCCATATTCGTTTCTGTAGGAGAGCTGGGCAGGCTGCGGATGCCCACAGCAAAGGAAGTCACGGCGAGCGCAGCGGCTGTCCTGACCACGACCAAACCTCCAGAAACGACAACTaaaagacattttattatttaaccttAAATACGTCAAAACGTCTTATTTCGAGGAATTCGACACAGTGTGGGTGTAACCGAGTGATTTGTGACCTTATGAGCAGTTACAGTTTCACCCCAAAAAATTAACAAATCCTAagtaaatgtcattaaaatcGAATTAAAGCATTTTCCTAAAGTCTATACGAGAAAATACAATTAGTTAAAAGTGCCAATATAAATAAGCTACGATTAGTTTAATTACATAAAACTGGCAAATTAACAGTTCGTGCCAAGTTCTAATCAAAATCCAAAATACCCTTTAAAATTAGCTTGTAAacctcatttttattttaagtcagaTCAATTAGAACGGATGTTAAGGCGGGagatttgtttgaaaaataccCGATccgagttaaaaataaataaataaaacatcgtCATATATATAGCTACAATCTCCTTTAAACAGCGGAAAAGGCTCAAAAAGATGCATTACTTCCTTCACTGATGACCACACACCTTTTAAATGCGAGGGAGACTCCGAAAAAtcccccccaaaacacacacacagcctccccGCATACATTTGCTCTTTCCACCATTACACGACCTACAAGAGACACGTTTCGGCTCGATCTTCCTGCTAGATGTTTATAACATGGCGTCCTCAACCGCACAAAATCACCCGCAAATGCTTTGTCTGGCTCTGCTCTAGTCGGGTCCCAAGGAAGCTGGCAGGAGATGTCCAAGCGCCCTCCGCGCCAGCCCACCCCCAGCACCGCCACACCACCGATTCTGGTGTCCATGTGGATTTCAAAATCGTAGAAATATCCGTTTTCAATGGGTTTTTTTTTCGGTACGTATTAAAAACCAACACGAAACAAAAGCGCTCCCTCTATTCGGCGCAGTTTCTATTTTCAGCGCAGTTCGCTCTAGTGCGGAGACAGGAAAACTGTCCTTCCACTAGAGAAACAcacaacccccccgcccccaaatTAAACTACTTCCGACCTGTTCTACGATCGTTTCGGATATAATTCGTGATATTAAAACCCGGCAAAGTGTTAAAACACGCTGGagaaaaaatagatacaaaacaCTTACTCGAACGTTCCGCAAAAGAAACAACTCCGCGCTCCTCCGCTGCCGACTGCAACACTAGACTGTGTAGCAGCTGAGGAGGCCGGGCTACTCTTTATAGCGCTTGTGACGTCACTGCACCTGTGACGCCCACTGCCGTTGCTTTTGCTTTCGCATTGGCGGAGAGACGGATATCATAATGTTGAATGAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143753 lncRNA downstream 150412 3908019 ~ 3910399 (-) True G114785
TU143693 lncRNA downstream 658873 3400432 ~ 3401938 (-) True G114739
TU143670 lncRNA downstream 919501 3140095 ~ 3141310 (-) True G114720
TU143625 lncRNA downstream 983051 3077041 ~ 3077760 (-) True G114681
TU143599 lncRNA downstream 1062553 2996035 ~ 2998258 (-) True G114658
TU143920 lncRNA upstream 231063 4295311 ~ 4352363 (-) True G114915
TU143950 lncRNA upstream 321685 4385933 ~ 4386891 (-) True G114941
TU144051 lncRNA upstream 525047 4589295 ~ 4590068 (-) True G115021
TU144070 lncRNA upstream 615292 4679540 ~ 4679749 (-) True G115037
TU144111 lncRNA upstream 756717 4820965 ~ 4821411 (-) True G115071
AMCG00018186 mRNA downstream 3338 4033690 ~ 4057473 (-) True AMCG00018186
AMCG00018188 mRNA downstream 33886 4025743 ~ 4026925 (-) True AMCG00018188
AMCG00018187 mRNA downstream 41987 4013931 ~ 4018824 (-) True AMCG00018187
AMCG00018177 mRNA downstream 234247 3815535 ~ 3826564 (-) True AMCG00018177
AMCG00018176 mRNA downstream 251291 3778175 ~ 3809520 (-) True AMCG00018176
AMCG00018185 mRNA upstream 1612 4065860 ~ 4067317 (-) True AMCG00018185
AMCG00018193 mRNA upstream 30739 4094987 ~ 4096066 (-) True AMCG00018193
AMCG00018194 mRNA upstream 47425 4111673 ~ 4112830 (-) True AMCG00018194
AMCG00018192 mRNA upstream 60049 4124297 ~ 4125298 (-) True AMCG00018192
AMCG00018195 mRNA upstream 107857 4172105 ~ 4185911 (-) True AMCG00018195
TU143456 other downstream 1451332 2609145 ~ 2609479 (-) True G114549
TU143313 other downstream 1771949 2281700 ~ 2288862 (-) True G114430
TU143230 other downstream 1993227 2006906 ~ 2067584 (-) False AMCG00018111
TU143224 other downstream 2054175 1985149 ~ 2006636 (-) False AMCG00018113
TU142989 other downstream 3134072 923507 ~ 926739 (-) False AMCG00018077
TU144050 other upstream 521814 4586062 ~ 4588297 (-) True G115020
TU144068 other upstream 582329 4646577 ~ 4651612 (-) False AMCG00018220
TU144242 other upstream 1222138 5286386 ~ 5287873 (-) True G115174
TU144251 other upstream 1235859 5300107 ~ 5304429 (-) True G115183
TU144253 other upstream 1235859 5300107 ~ 5304388 (-) False G115183

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00048135 True 411 mRNA 0.60 1 NC_007136.7 36349574 ~ 36349984 (+)
grasscarp (Ctenopharyngodon idella) CI01000422_00068225_00068635.mRNA True 2169 mRNA 0.37 1 CI01000422 66845 ~ 69013 (-)
bowfin (Amia calva) TU129846 True 226 lncRNA 0.41 1 CM030133.1 8341363 ~ 8341588 (-)
tiger barb (Puntius tetrazona) TU236989 False 790 TUCP 0.50 5 NC_056722.1 3396824 ~ 3399583 (+)
mexican tetra (Astyanax mexicanus) TU129846 False 861 lncRNA 0.50 4 NC_035907.1 1482744 ~ 1486445 (-)