AMCG00018194


Basic Information

Item Value
gene id AMCG00018194
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4111673 ~ 4112830 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018194
ATGACCACCACCGAATCAAGTACAATGACGAGCACCGACCCCACAGTCAGCACCTCTACGGACTACAGCTCCACGGCCTATAGCTCCACGACCTACAGCTCCACGGCCCACCACCCGGCATCCATCCTGCAGTATCCCAGCATGCAACAGAAAGCCAACATCAGCGACCTCACTGCAGCGTCAGACATCACCTCGAGAGCGAACTACTGCTACATGTTCTTCATCTTGGCCGGCCTGTGCGCCACTGTCTTCATCTTCTACACCTTCCTGCACGCCTACAGAACGAGACGGGCCCTGAGCAAAGTGGACTCTTTCTTCGGTGCCCTTTGCATTTCTGACCTCTTTGTCATCCTCTACTCCTTATCGGCGGTGGCGCACCGGCCCAAATACTTGGAGACCACGGGCCTGGGCTGTGCCATCCTGTCCTTCTTTTTCAATGTGGCCCACCTCAGCTCCCAGTTCCTCCAGGTGCTGGCGGTGTCCTTCGTGATGTACGATGAAATCCCCCAGGGACCAACTCTGGTGAGGAGGCTGCTGGACAGCGGGCCGGCGTGCGCGGCACTGACCGCCGCCATGGCCGCCCTCTTCTCCATGCTGCTGGCAGGGCTTCTGGGCTTTCAGGACCTACTCCACAACAACCTCCACTGCCAGCTGGACCCCCTACAGGCCGTGCGGGCGTACGACATCACCAAGTTCTGCATCGCATTTGCGATCCCCCAAGTTGTCCTCCTCCTCACGTGCTTCGTCGCCTGCACGAGGTCGGGGGGCAGCGCATGGTCCAAGCTGAAGGCCTGTCCCGCGTCTCTGGCCGTATCCCTGCTGACGCTGCTCTGCCGGCTGTTCTACTACTGCGTCCTGCTCCATCGGACCAGCCAGAAGTACGGCTGGGAGAGCGGCTCGCCCCAGCAGGAGGCCCTGATGAACGTCGCCGAGTTCGTGCTCTTCTCCGGCAGCTGCCTGGACCTGGTGCTCGTCGTCTTCCTTTACGAGCCCTGCCGGGACAGGCTGCAGGTCCAGCTGAGAGACTGCTGCCACCGGCTGCGCGGCCGCGAAGCCAACAGGAACATCATGACGCCGCACATCGAGATCGCAGACATGGACGAGGCGCTCGACTTGGATCCGCAAGAGGGTCAGACAGGAGGCGCTTCCACCGCTTGA

Function

GO: NA

KEGG:

id description
ko04660 T cell receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018194 True 1158 mRNA 0.61 1 4111673 4112830

Neighbor

gene id symbol gene type direction distance location
AMCG00018193 gper1,LOC106601100,LOC106607359,LOC107703333,LOC107579847,LOC107719188 coding downstream 15607 4094987 ~ 4096066 (-)
AMCG00018185 NA coding downstream 44356 4065860 ~ 4067317 (-)
AMCG00018186 NA coding downstream 54200 4033690 ~ 4057473 (-)
AMCG00018188 NA coding downstream 84748 4025743 ~ 4026925 (-)
AMCG00018187 tsr3 coding downstream 92849 4013931 ~ 4018824 (-)
AMCG00018192 gpr146,LOC107703371,LOC107550312,LOC107710650,LOC107674685,LOC107565765 coding upstream 11467 4124297 ~ 4125298 (-)
AMCG00018195 NA coding upstream 59275 4172105 ~ 4185911 (-)
AMCG00018202 NA coding upstream 79648 4192478 ~ 4196034 (-)
AMCG00018201 NA coding upstream 83205 4196035 ~ 4197864 (-)
AMCG00018200 wdr24,LOC106578258 coding upstream 87072 4199902 ~ 4209121 (-)
G114785 NA non-coding downstream 201274 3908019 ~ 3910399 (-)
G114739 NA non-coding downstream 709735 3400432 ~ 3401938 (-)
G114720 NA non-coding downstream 970363 3140095 ~ 3141310 (-)
G114681 NA non-coding downstream 1033913 3077041 ~ 3077760 (-)
G114658 NA non-coding downstream 1113415 2996035 ~ 2998258 (-)
G114915 NA non-coding upstream 182481 4295311 ~ 4352363 (-)
G114941 NA non-coding upstream 273103 4385933 ~ 4386891 (-)
G115021 NA non-coding upstream 476465 4589295 ~ 4590068 (-)
G115037 NA non-coding upstream 566710 4679540 ~ 4679749 (-)
G115071 NA non-coding upstream 708135 4820965 ~ 4821411 (-)
G114838 NA other downstream 24642 4028016 ~ 4087031 (-)
AMCG00018142 NA other downstream 1463862 2636501 ~ 2647811 (-)
G114549 LOC104962440 other downstream 1502194 2609145 ~ 2609479 (-)
G114430 srl,LOC107553668,LOC107661647,LOC107718567,LOC107695714 other downstream 1822811 2281700 ~ 2288862 (-)
AMCG00018111 abca3,LOC102775623,LOC102307646,LOC107742093 other downstream 2044089 2006906 ~ 2067584 (-)
G115020 NA other upstream 473232 4586062 ~ 4588297 (-)
AMCG00018220 NA other upstream 533317 4646147 ~ 4651641 (-)
G115174 NA other upstream 1173556 5286386 ~ 5287873 (-)
G115183 NA other upstream 1187277 5300107 ~ 5304429 (-)
AMCG00018251 natd1,LOC107745813 other upstream 1244016 5356846 ~ 5366754 (-)

Expression


Co-expression Network