AMCG00018193 (gper1,LOC106601100,LOC106607359,LOC107703333,LOC107579847,LOC107719188)


Basic Information

Item Value
gene id AMCG00018193
gene name gper1,LOC106601100,LOC106607359,LOC107703333,LOC107579847,LOC107719188
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4094987 ~ 4096066 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018193
ATGGAAGTGTCCACAAGCTCCCTGATTCACATCTACGGGAACTGTtcagagctggagctgaacaCGTCGTACGACTGCAATAATACCGGCTTCCAGGATGTGGCCGAGGAGGGCGGCGACACCTACCAGTTCTACATCATCAGCCTGTTCCTCTCCTGCTTGTACACCATCTTCCTCTTCCCCATCGGCTTCATCGGGAACATCCTTATCCTGGTCGTCAACCTGACCCACCGGGACAAGATGACCATCCCGGACCTGTACTTCGTCAACCTGGCGGTGGCCGACCTCATCTTGGTGGCCGATTCCCTGATCGAGGTCTTCAACCTGAACGAGAAGTACTACGACATCGCCATCCTCTGTACCTTCATGTCCCTGTTCCTCCAGATCAACATGTACAGCAGCATCTTCTTCCTGACGTGGATGAGCTTCGACAGGTACGTGGCGTTGGCCAGCGCCATGAGCAGCAGCCCCTTGCGGACCATGCAGCATGCCAAGCTGAGCTGCAGCCTCATCTGGATGGCCAGCATCCTGGCCACCCTGCTTCCCTTCACCATCGTGCAGACCCAGCACACGGGTGAGGTCCACTTCTGCTTCGCCAACGTCATCGAGATCCAGTGGCTGGAGGTCACCATCGGTTTCCTGGTGCCCTTCTCCGTCATCGGCCTGTGCTACTCGCTCATCGTGCGCATCCTCATGCGGGCGCAGAAGCACCGAGGCCTGTGGCCCCGGCGGCAGAAGGCCCTGCGCATGATCGTGGTGGTGGTGCTAGTGTTTTTCATCTGCTGGCTGCCCGAGAACGTCTTCATCAGCAtccagctcctgcagggaaCGGAGGGCCGGGCGCAGCGCAGCGGCAGCACCCTGATGCACGACTACCCGCTCACGGGACACATCGTCAACCTGGCGGCCTTCTCCAACAGCTGCCTGAACCCCATTATCTACAGCTTCCTGGGGGAGACGTTCAGGGACAAGCTGAGACTGTTCATCAAACAGAAAGCCGGTTGGTCCGTGCTGTACCGCTTCTGTCACCACACCCTGGATTTACAGATTCCCGTCAGGAGCGAAGTGTCCGAGGTTTAA

Function

symbol description
gper1 Enables estrogen receptor activity and steroid binding activity. Involved in several processes, including cellular response to estradiol stimulus; negative regulation of oocyte maturation; and positive regulation of nitrogen compound metabolic process. Acts upstream of or within heart contraction. Located in plasma membrane. Is expressed in several structures, including blastomere; liver; nervous system; olfactory region; and pleuroperitoneal region. Orthologous to human GPER1 (G protein-coupled estrogen receptor 1).

NR:

description
PREDICTED: G-protein coupled estrogen receptor 1-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:1900194 negative regulation of oocyte maturation biological_process
GO:2000179 positive regulation of neural precursor cell proliferation biological_process
GO:0051447 negative regulation of meiotic cell cycle biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0071392 cellular response to estradiol stimulus biological_process
GO:0043950 positive regulation of cAMP-mediated signaling biological_process
GO:0040019 positive regulation of embryonic development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0007420 brain development biological_process
GO:0001934 positive regulation of protein phosphorylation biological_process
GO:0043524 negative regulation of neuron apoptotic process biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0032591 dendritic spine membrane cellular_component
GO:0005769 early endosome cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0030424 axon cellular_component
GO:0055037 recycling endosome cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0030054 cell junction cellular_component
GO:0016323 basolateral plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0005496 steroid binding molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0030284 estrogen receptor activity molecular_function

KEGG:

id description
K04246 GPER1, GPR30; G-protein coupled estrogen receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018193 True 1080 mRNA 0.58 1 4094987 4096066

Neighbor

gene id symbol gene type direction distance location
AMCG00018185 NA coding downstream 27670 4065860 ~ 4067317 (-)
AMCG00018186 NA coding downstream 37514 4033690 ~ 4057473 (-)
AMCG00018188 NA coding downstream 68062 4025743 ~ 4026925 (-)
AMCG00018187 tsr3 coding downstream 76163 4013931 ~ 4018824 (-)
AMCG00018177 cog7 coding downstream 268423 3815535 ~ 3826564 (-)
AMCG00018194 NA coding upstream 15607 4111673 ~ 4112830 (-)
AMCG00018192 gpr146,LOC107703371,LOC107550312,LOC107710650,LOC107674685,LOC107565765 coding upstream 28231 4124297 ~ 4125298 (-)
AMCG00018195 NA coding upstream 76039 4172105 ~ 4185911 (-)
AMCG00018202 NA coding upstream 96412 4192478 ~ 4196034 (-)
AMCG00018201 NA coding upstream 99969 4196035 ~ 4197864 (-)
G114785 NA non-coding downstream 184588 3908019 ~ 3910399 (-)
G114739 NA non-coding downstream 693049 3400432 ~ 3401938 (-)
G114720 NA non-coding downstream 953677 3140095 ~ 3141310 (-)
G114681 NA non-coding downstream 1017227 3077041 ~ 3077760 (-)
G114658 NA non-coding downstream 1096729 2996035 ~ 2998258 (-)
G114915 NA non-coding upstream 199245 4295311 ~ 4352363 (-)
G114941 NA non-coding upstream 289867 4385933 ~ 4386891 (-)
G115021 NA non-coding upstream 493229 4589295 ~ 4590068 (-)
G115037 NA non-coding upstream 583474 4679540 ~ 4679749 (-)
G115071 NA non-coding upstream 724899 4820965 ~ 4821411 (-)
G114838 NA other downstream 7956 4028016 ~ 4087031 (-)
AMCG00018142 NA other downstream 1447176 2636501 ~ 2647811 (-)
G114549 LOC104962440 other downstream 1485508 2609145 ~ 2609479 (-)
G114430 srl,LOC107553668,LOC107661647,LOC107718567,LOC107695714 other downstream 1806125 2281700 ~ 2288862 (-)
AMCG00018111 abca3,LOC102775623,LOC102307646,LOC107742093 other downstream 2027403 2006906 ~ 2067584 (-)
G115020 NA other upstream 489996 4586062 ~ 4588297 (-)
AMCG00018220 NA other upstream 550081 4646147 ~ 4651641 (-)
G115174 NA other upstream 1190320 5286386 ~ 5287873 (-)
G115183 NA other upstream 1204041 5300107 ~ 5304429 (-)
AMCG00018251 natd1,LOC107745813 other upstream 1260780 5356846 ~ 5366754 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_01074910_01076076 GPER1 coding CI01000046 null 1074798 ~ 1076424 (-)