RNA id: TU143950


Basic Information

Item Value
RNA id TU143950
length 959
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G114941
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4385933 ~ 4386891 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNAATGAATTCTTATTATCAGTATTGTTTCATGAATTACATAAAGTGTACTGTGGCTTGTCTTTCCATTTGTACTGTGACCAAACCCAGTGTCACGGCCATCCGGACCTTGTGGTTCCCTGTCTGAGGGCCACAGGTGAGTTGGGAGCCGTGGACGAATCCACAGCTGAGAGAGTATGTTAACTGTTTTCCAGGAGGGCAGAGAAGTGTAACCCCGACTGTGATGTACACTGAACAAAAGGATGGCTGCAGGAATTTGTAGGGACTTACAGGAACATTGTAGAGGAAAGGAAAGGTAAAGTACAAATTAGAGCTGTGAATTGGAAATTAAAAGACAACCAATACAAAGGAAAAATCAATgcctcctccacccccccccaactcAATCAATGCTAACTGCTCCTAATGAACAAAGTATATACTAGAATGCTAGACAGCCATCTCACAGAGCTAATGTTTCAGTGTCTAATTTAGGTCTCTGCTCCAACAACAACATTACTGTGGCTTAATCGAaatctttatgaaaatgtacagcTGGCCTGGAGAGACCCCTGGGACCCATCGCAATGTCAGGAGAGGATCATTCCAGTGTGTCGTCACATGCTCTCATCAGGGTGCACCATGGGAACTTAGCCTTGAAAAACTGTTTCTGTGTATTTGCCTAGTTTCCTTCGAATGCTAACTATTGTTACTTCCTGTATTCATACAATAAACagcaatgcaattttaaatgttttgactgCTGCACACTTCCTGGGTTATGCAGTCCTCTTAtccagaggtgtaaaaagtattcagaagtcatacttgagtaaaagtaaaaatattctatcaaaaacttactccagtaaaagtaaaaagtctcccattcaaacagtacttgagcaaaagttaaaaagtagctactttcaagagtactcaagtaGCATATTTATGGCTCCTCAATTTTATCTTCAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143920 lncRNA downstream 33570 4295311 ~ 4352363 (-) True G114915
TU143819 lncRNA downstream 298902 4028016 ~ 4087031 (-) False G114838
TU143822 lncRNA downstream 298902 4028016 ~ 4087031 (-) False G114838
TU143815 lncRNA downstream 321685 4028016 ~ 4064248 (-) True G114838
TU143814 lncRNA downstream 321685 4060811 ~ 4064248 (-) False G114838
TU144051 lncRNA upstream 202404 4589295 ~ 4590068 (-) True G115021
TU144070 lncRNA upstream 292649 4679540 ~ 4679749 (-) True G115037
TU144111 lncRNA upstream 434074 4820965 ~ 4821411 (-) True G115071
TU144144 lncRNA upstream 649840 5036731 ~ 5058586 (-) True G115100
TU144191 lncRNA upstream 766161 5153052 ~ 5203873 (-) True G115144
AMCG00018205 mRNA downstream 5886 4370469 ~ 4380047 (-) True AMCG00018205
AMCG00018208 mRNA downstream 26043 4350006 ~ 4359890 (-) True AMCG00018208
AMCG00018209 mRNA downstream 44448 4333059 ~ 4341485 (-) True AMCG00018209
AMCG00018207 mRNA downstream 54758 4315262 ~ 4331175 (-) True AMCG00018207
AMCG00018206 mRNA downstream 72566 4300555 ~ 4313367 (-) True AMCG00018206
AMCG00018210 mRNA upstream 70946 4457837 ~ 4460720 (-) True AMCG00018210
AMCG00018223 mRNA upstream 218260 4605151 ~ 4610325 (-) True AMCG00018223
AMCG00018221 mRNA upstream 235379 4622270 ~ 4628633 (-) True AMCG00018221
AMCG00018219 mRNA upstream 252813 4639704 ~ 4640258 (-) True AMCG00018219
AMCG00018220 mRNA upstream 259256 4646147 ~ 4651641 (-) True AMCG00018220
TU143816 other downstream 321685 4060811 ~ 4064248 (-) False G114838
TU143456 other downstream 1776454 2609145 ~ 2609479 (-) True G114549
TU143313 other downstream 2097071 2281700 ~ 2288862 (-) True G114430
TU143230 other downstream 2318349 2006906 ~ 2067584 (-) False AMCG00018111
TU143224 other downstream 2379297 1985149 ~ 2006636 (-) False AMCG00018113
TU144050 other upstream 199171 4586062 ~ 4588297 (-) True G115020
TU144068 other upstream 259686 4646577 ~ 4651612 (-) False AMCG00018220
TU144242 other upstream 899495 5286386 ~ 5287873 (-) True G115174
TU144251 other upstream 913216 5300107 ~ 5304429 (-) True G115183
TU144253 other upstream 913216 5300107 ~ 5304388 (-) False G115183

Expression Profile