RNA id: TU143822


Basic Information

Item Value
RNA id TU143822
length 858
lncRNA type read_through
GC content 0.29
exon number 4
gene id G114838
representative False

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4028016 ~ 4087031 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGAAAATGTCAAACTCATTGTGGCATGCAGTACCAAGATCtctcgctttttttttttttttttttttttttttttttttttttttttGAGGTAGTGGAAAGTTTATTTACAACCCAATAATCacaatgcaaaaaaagaaaagtaaagtaaagaaaaagatTACAAGTCTACTAATAATTTATCCCATTTGAAGCATGCAAACTACATAATCTACAGCACAATGAGCCAGAGGTATAACAATTTCTGAtacaaattgatttttttttttgttttgtttatttattttaaaaacctgaGTGGGAGTTTGAAGGAATGTTTTACAAAACGCTTGCTACTTTTGCACTGTAAACCactagccttttttttttttttttttttttttttttttttttttttatatataGAAGgcattatttataatgcataatCATTTACTTGTAGTGTATGGTTTAAAATTGTTAACACTTGTTAAAATTTTTACACTATAGCATTTATGCAATGGTTTACAGAATTcatggaattatttttattatcattatgggaattaaaataatttttgatCTTAAACGTGTgtgagtgtttattttaagtttcttgcttcaaactactcggttcacaacattacagattaaattaaactagtccaataattaaaaactaacagCTCATTGCTTAACAGGGATATAAACCACTCCAATCTTCTTCATCcctttgtttccagtttgtaCAGCCTGTGATGCAGAAAACACCAGCCTGGATGGCCCAGAATTGCCTTAAATTGCATCATGTTGCTGTTCTTTGGTGCAATCTGTCAATCTTTAGTTTTGTAGTCTCCGGTTTAATGAGTTAAGTGGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143753 lncRNA downstream 117617 3908019 ~ 3910399 (-) True G114785
TU143693 lncRNA downstream 626078 3400432 ~ 3401938 (-) True G114739
TU143670 lncRNA downstream 886706 3140095 ~ 3141310 (-) True G114720
TU143625 lncRNA downstream 950256 3077041 ~ 3077760 (-) True G114681
TU143599 lncRNA downstream 1029758 2996035 ~ 2998258 (-) True G114658
TU143920 lncRNA upstream 208280 4295311 ~ 4352363 (-) True G114915
TU143950 lncRNA upstream 298902 4385933 ~ 4386891 (-) True G114941
TU144051 lncRNA upstream 502264 4589295 ~ 4590068 (-) True G115021
TU144070 lncRNA upstream 592509 4679540 ~ 4679749 (-) True G115037
TU144111 lncRNA upstream 733934 4820965 ~ 4821411 (-) True G115071
AMCG00018188 mRNA downstream 1091 4025743 ~ 4026925 (-) True AMCG00018188
AMCG00018187 mRNA downstream 9192 4013931 ~ 4018824 (-) True AMCG00018187
AMCG00018177 mRNA downstream 201452 3815535 ~ 3826564 (-) True AMCG00018177
AMCG00018176 mRNA downstream 218496 3778175 ~ 3809520 (-) True AMCG00018176
AMCG00018171 mRNA downstream 544113 3481708 ~ 3483903 (-) True AMCG00018171
AMCG00018193 mRNA upstream 7956 4094987 ~ 4096066 (-) True AMCG00018193
AMCG00018194 mRNA upstream 24642 4111673 ~ 4112830 (-) True AMCG00018194
AMCG00018192 mRNA upstream 37266 4124297 ~ 4125298 (-) True AMCG00018192
AMCG00018195 mRNA upstream 85074 4172105 ~ 4185911 (-) True AMCG00018195
AMCG00018202 mRNA upstream 105447 4192478 ~ 4196034 (-) True AMCG00018202
TU143456 other downstream 1418537 2609145 ~ 2609479 (-) True G114549
TU143313 other downstream 1739154 2281700 ~ 2288862 (-) True G114430
TU143230 other downstream 1960432 2006906 ~ 2067584 (-) False AMCG00018111
TU143224 other downstream 2021380 1985149 ~ 2006636 (-) False AMCG00018113
TU142990 other downstream 3101277 923507 ~ 926739 (-) False AMCG00018077
TU144050 other upstream 499031 4586062 ~ 4588297 (-) True G115020
TU144068 other upstream 559546 4646577 ~ 4651612 (-) False AMCG00018220
TU144242 other upstream 1199355 5286386 ~ 5287873 (-) True G115174
TU144251 other upstream 1213076 5300107 ~ 5304429 (-) True G115183
TU144253 other upstream 1213076 5300107 ~ 5304388 (-) False G115183

Expression Profile