RNA id: TU144051


Basic Information

Item Value
RNA id TU144051
length 774
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G115021
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4589295 ~ 4590068 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCATCTTATTCTGtgtagcttttcatttttttacagtaaCTTGGAAAGGCTATAATTCTTCAAACAATAATATGATTACATCTTCAGGATTTCTTCAAAGGGAACAGTAACATACAGCAGTAAACAATACTGatcttttaattaatacaatatccTTCACAATTAGAATTAACTGCAGTTTACAATATAATCCTCAGTTACCAAGtgagtttttttccccaatagatcttttaaatatattttgctttataaCTGGCAAGTGAGTGCAGCACCCAGCAGTGCGAGACTATCTTTGGAGACGTGGAAGCAAGTTTGTGAACAAAAGGCTTATTcttcagagagagggaggggagaaaaatatgtatatacacatttagaCTATTACCATTTTCATAACAAAATACAGGCTGTGGAAAATCGCTCCACAAGCACGACCCAAGCTGTCACTAAGGCGGGTCTGAGAGAGGGCTTTGTGCTCATAGGAGACCAGGTCCcccccacaaaaataaaagtgtcgGGTGGACCGTGGGCTGGCACAGGGCGTCGGAGGCAGTCTGACTAGGGTGGCCCGTCCCCACACTGCCACTCCACCTGCACGCTGAAGGACAAGACCTCGGACGGTCCGTTTGAACTCTCCTGGTTCTTAGAATAAAAGCCACGTTGATAACGAGATTGTAGCACAAGAGACAAGAGCACAGACACTGAAGCGACGGCTACAACTACTCTCCATCGATCTACTGCGCCGCGTCGTTCCATCACCCTCTGAAGCCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143950 lncRNA downstream 202404 4385933 ~ 4386891 (-) True G114941
TU143920 lncRNA downstream 236932 4295311 ~ 4352363 (-) True G114915
TU143819 lncRNA downstream 502264 4028016 ~ 4087031 (-) False G114838
TU144070 lncRNA upstream 89472 4679540 ~ 4679749 (-) True G115037
TU144111 lncRNA upstream 230897 4820965 ~ 4821411 (-) True G115071
TU144144 lncRNA upstream 446663 5036731 ~ 5058586 (-) True G115100
TU144191 lncRNA upstream 562984 5153052 ~ 5203873 (-) True G115144
TU144208 lncRNA upstream 637912 5227980 ~ 5243187 (-) True G115157
AMCG00018210 mRNA downstream 128575 4457837 ~ 4460720 (-) True AMCG00018210
AMCG00018205 mRNA downstream 209248 4370469 ~ 4380047 (-) True AMCG00018205
AMCG00018208 mRNA downstream 229405 4350006 ~ 4359890 (-) True AMCG00018208
AMCG00018209 mRNA downstream 247810 4333059 ~ 4341485 (-) True AMCG00018209
AMCG00018207 mRNA downstream 258120 4315262 ~ 4331175 (-) True AMCG00018207
AMCG00018223 mRNA upstream 15083 4605151 ~ 4610325 (-) True AMCG00018223
AMCG00018221 mRNA upstream 32202 4622270 ~ 4628633 (-) True AMCG00018221
AMCG00018219 mRNA upstream 49636 4639704 ~ 4640258 (-) True AMCG00018219
AMCG00018220 mRNA upstream 56079 4646147 ~ 4651641 (-) True AMCG00018220
AMCG00018222 mRNA upstream 76117 4666185 ~ 4672356 (-) True AMCG00018222
TU144050 other downstream 998 4586062 ~ 4588297 (-) True G115020
TU143816 other downstream 525047 4060811 ~ 4064248 (-) False G114838
TU143456 other downstream 1979816 2609145 ~ 2609479 (-) True G114549
TU143313 other downstream 2300433 2281700 ~ 2288862 (-) True G114430
TU143230 other downstream 2521711 2006906 ~ 2067584 (-) False AMCG00018111
TU144068 other upstream 56509 4646577 ~ 4651612 (-) False AMCG00018220
TU144242 other upstream 696318 5286386 ~ 5287873 (-) True G115174
TU144251 other upstream 710039 5300107 ~ 5304429 (-) True G115183
TU144253 other upstream 710039 5300107 ~ 5304388 (-) False G115183
TU144300 other upstream 766778 5356846 ~ 5366754 (-) True AMCG00018251

Expression Profile