RNA id: TU143920


Basic Information

Item Value
RNA id TU143920
length 202
lncRNA type read_through
GC content 0.42
exon number 2
gene id G114915
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4295311 ~ 4352363 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtaatatatatatatatatataggcaatacaaaaattaattaattaattgttcttGTTCCCAGTATAAAGCAACACTGTGTGTCAAAGTATTCCTCTCGCCGTCTTGGACTGTCGGAACCCCCCTTCCTTGTCAAAACGGTCCACTTTGCCTGTAGTGAGACGTGTCCCACAAGTCCAAGCGCGTCTGTCCCACTGTGGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143819 lncRNA downstream 208280 4028016 ~ 4087031 (-) False G114838
TU143822 lncRNA downstream 208280 4028016 ~ 4087031 (-) False G114838
TU143815 lncRNA downstream 231063 4028016 ~ 4064248 (-) True G114838
TU143814 lncRNA downstream 231063 4060811 ~ 4064248 (-) False G114838
TU143817 lncRNA downstream 231063 4060811 ~ 4064248 (-) False G114838
TU143950 lncRNA upstream 33570 4385933 ~ 4386891 (-) True G114941
TU144051 lncRNA upstream 236932 4589295 ~ 4590068 (-) True G115021
TU144070 lncRNA upstream 327177 4679540 ~ 4679749 (-) True G115037
TU144111 lncRNA upstream 468602 4820965 ~ 4821411 (-) True G115071
TU144144 lncRNA upstream 684368 5036731 ~ 5058586 (-) True G115100
AMCG00018199 mRNA downstream 34561 4242278 ~ 4260750 (-) True AMCG00018199
AMCG00018198 mRNA downstream 70028 4219821 ~ 4225283 (-) True AMCG00018198
AMCG00018200 mRNA downstream 86190 4199902 ~ 4209121 (-) True AMCG00018200
AMCG00018201 mRNA downstream 97447 4196035 ~ 4197864 (-) True AMCG00018201
AMCG00018202 mRNA downstream 99277 4192478 ~ 4196034 (-) True AMCG00018202
AMCG00018205 mRNA upstream 18106 4370469 ~ 4380047 (-) True AMCG00018205
AMCG00018210 mRNA upstream 105474 4457837 ~ 4460720 (-) True AMCG00018210
AMCG00018223 mRNA upstream 252788 4605151 ~ 4610325 (-) True AMCG00018223
AMCG00018221 mRNA upstream 269907 4622270 ~ 4628633 (-) True AMCG00018221
AMCG00018219 mRNA upstream 287341 4639704 ~ 4640258 (-) True AMCG00018219
TU143816 other downstream 231063 4060811 ~ 4064248 (-) False G114838
TU143456 other downstream 1685832 2609145 ~ 2609479 (-) True G114549
TU143313 other downstream 2006449 2281700 ~ 2288862 (-) True G114430
TU143230 other downstream 2227727 2006906 ~ 2067584 (-) False AMCG00018111
TU143224 other downstream 2288675 1985149 ~ 2006636 (-) False AMCG00018113
TU144050 other upstream 233699 4586062 ~ 4588297 (-) True G115020
TU144068 other upstream 294214 4646577 ~ 4651612 (-) False AMCG00018220
TU144242 other upstream 934023 5286386 ~ 5287873 (-) True G115174
TU144251 other upstream 947744 5300107 ~ 5304429 (-) True G115183
TU144253 other upstream 947744 5300107 ~ 5304388 (-) False G115183

Expression Profile