RNA id: AMCG00018221


Basic Information

Item Value
RNA id AMCG00018221
length 2355
RNA type mRNA
GC content 0.64
exon number 17
gene id AMCG00018221
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4622270 ~ 4628633 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGTGTATTTCGATCACCGTATTGAAGCTCCCGACTCAAACGGGGCGCCCTGTCAGATCGCCTGGCACTCGTCCCAGCCTGTGCTCGGGGTGGCCTCTCTCAGCCCCGCCGCTGGGGGCTCTGTTGATCTGTACCTCCAACAGGGGGAGCATGTTGGTAATTCGCACATTGAGCGCCCGTTCCAGCCCACGGTGCTGCGCTGGCATCCTGCTAAGCCCGTGCTGGCCGTGGGCTGGGAGACGGGGGAGGTGCTCTTACACACCCACCCGACTGGGGAGCAGACGACGCTGTCCTCTGCTCACAGCGCCTGCATCACCTTGCTGGAGTGGAGCAGCAATGGGAGCCGCTTGGTCACTGGGGACCAGCTGGGGGTGCTGGCGGTGTGGAGGGCGGACGCTCGTGGCAGGCTGCAGGGGGCTCCGCTGGTGAAGCATGATTACGGCAAGCCATTGACCTGCTGCGTCTTCAGACCGGCACCTCCTGGAGAGGATGTGGCACAGCTGGCTCGGGCAGCAGTGAGCGGAGACGAAAGCGCCCTGGACATGTTCGGTTGGAGGAAGGCTGGGAAGGGGACGTCCCTCAAGCTGGGACCCCAGGAAGGGCTGAGCTGCTTTGTCAGCACCGACGACGGCGGCGTGCACTGCCTGGACGAGAAGGGCAAGAGCAGCCAGGTTCTGAGTGCGGACGGCCCCGTGCAGAAGCTGCTGTACCTGGAGAGGCGAGACATGCTGGTAGTGATCACGGAGACGCTGCTGCTCTCCCAGTACAGCGTGGGGCCAGAGGGCGGCACCCAGGAGCTCATGAAGGTGAAGCTCAGTGGGAAGAGTGGGCACGGCGCCGACATGGACTGGGCCGGACAGGGGCTGCTGATCACGGCCACGGGGGAGGTCGTCATCAGACTCTGGGACCTGGAGCGAGATGATAACTACGTGCTGTCTCTGGATGTAAACCTGGGCTTTGAGTCGGGAGAGACGCTGAACTGTGTGTCGTACTGTGCTGCAAAAGGTATCCTGGCGGCGGGGACGGGCCGGGGCCGCATTGCCATGTGGCGGAAGGTGCATCTGACCAACCAGAGCGGGCAGAAGACGGACGGGAAGGGCCAATGGCATCTGCAGACTCCAACGGAGGTAGAGGGCAACGTCACCCAACTCCAGTGGGGCTCCGGTCTGAACCTGCTGGCCGCCAACGGCGTGAGCACTGTGCTGATCCTCTCGGAACACGTCATGTCCGCACACTTCAGCCAGCAGGTGGCAGCGGTGCAGCTCACACCCAACCAGCTGAGCCTGAGCTACTTCAGCACAGGGGCGCAGCACAGCCTGCGCACAGACATGCACGTCAAGGGCATCTGTGTCGCCAAGGATACCGTGACGGTCTGGAACGGGAAGCAGGTGTCGGTATTTGAGCCGGCAGGCGGAGCTCTGTGCAGCGCAGGCTCCTTCCCTTGCGAGTCCCTGGTCCTCGCGATGCACGAGGAGAACATCTACACCGTTGAGCCCAACCGGGTGCAGGTCCGGACCCTGCAGGGCACAGTGAAGCAGCTCCTGGCCTTCTCCGAGGTGGAGGGCACCCCTGCGCTCCTGAACGTCTGCAGGACCTTCCTGGCTGTGGGCACCGACACCATGCACGTGAAGGTCTTCGATCTGTCCCGCAGGGAAGCAAAGCCGCACTGCACCGCAAAGAACCTGGCTGAGCTCATCCCAGGCCTGGGGGCCCTGTCTTCGGTCAAGTGCAACGCCAATGGCAGCCAAGTCAGCGTGCTCGTCACCCGGGCCGACGGGAGCCCTGACTGCCGGGTTTACTTCTACGATGTGGAGATGGACATTCTCACCTACTTCGACTTCTCCACCGGCCGACCTCCTACCGGGAGCTTCCAAGCAGAGGAGCCAGAGAGGGCCCATTCGGACAGCAGCGAGTTGTGCGGCCGCTGCCCGGTCACTCAGTTCTGGGACGAGAGCGAACCCCGACTGTTTGTGTGCGAGACGGAGGCGATGGACCCGGCCATGCTCAGCCCTGCCCGCGTGGAGCAGgaCGAAGTGCTGGTGGTGTCCTTCTTCACTACGCAGGAGCACGGGCTGCTGCTCCAGGACTCCTACCCGAGGCCGGCGGGCGTGCAGGGGCTGCTGGCTCTCGACGTGCCCTTTTACTACTTTACCTGCAAGCCTGGGGAGAGCGAGGGCGCTCCGGCCCCGTCCTCTGCCCCTCAGATGGTGTCCCGGCGGGCGATGCGGGACTTCGTGGGCCTCGAAGACTGCGACAAGCCCACCCGGGACGCCATGCTGAACTTCAGCTTCTACCTGACCATCGGGGACATGGACGAGGCCTTCAAGTCCATCAAGCTCATCAAGAGGTAG

Function

GO: NA

KEGG:

id description
K19672 IFT140; intraflagellar transport protein 140

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144051 lncRNA downstream 32202 4589295 ~ 4590068 (-) True G115021
TU143950 lncRNA downstream 235379 4385933 ~ 4386891 (-) True G114941
TU143920 lncRNA downstream 269907 4295311 ~ 4352363 (-) True G114915
TU143814 lncRNA downstream 558022 4060811 ~ 4064248 (-) False G114838
TU144070 lncRNA upstream 50907 4679540 ~ 4679749 (-) True G115037
TU144111 lncRNA upstream 192332 4820965 ~ 4821411 (-) True G115071
TU144144 lncRNA upstream 408098 5036731 ~ 5058586 (-) True G115100
TU144191 lncRNA upstream 524419 5153052 ~ 5203873 (-) True G115144
TU144208 lncRNA upstream 599347 5227980 ~ 5243187 (-) True G115157
AMCG00018223 mRNA downstream 11945 4605151 ~ 4610325 (-) True AMCG00018223
AMCG00018210 mRNA downstream 161550 4457837 ~ 4460720 (-) True AMCG00018210
AMCG00018205 mRNA downstream 242223 4370469 ~ 4380047 (-) True AMCG00018205
AMCG00018208 mRNA downstream 262380 4350006 ~ 4359890 (-) True AMCG00018208
AMCG00018209 mRNA downstream 280785 4333059 ~ 4341485 (-) True AMCG00018209
AMCG00018219 mRNA upstream 11071 4639704 ~ 4640258 (-) True AMCG00018219
AMCG00018220 mRNA upstream 17514 4646147 ~ 4651641 (-) True AMCG00018220
AMCG00018222 mRNA upstream 37552 4666185 ~ 4672356 (-) True AMCG00018222
AMCG00018230 mRNA upstream 60182 4688815 ~ 4689879 (-) True AMCG00018230
AMCG00018226 mRNA upstream 66729 4695362 ~ 4697902 (-) True AMCG00018226
TU144050 other downstream 33973 4586062 ~ 4588297 (-) True G115020
TU143816 other downstream 558022 4060811 ~ 4064248 (-) False G114838
TU143456 other downstream 2012791 2609145 ~ 2609479 (-) True G114549
TU143313 other downstream 2333408 2281700 ~ 2288862 (-) True G114430
TU143230 other downstream 2554686 2006906 ~ 2067584 (-) False AMCG00018111
TU144068 other upstream 17944 4646577 ~ 4651612 (-) False AMCG00018220
TU144242 other upstream 657753 5286386 ~ 5287873 (-) True G115174
TU144251 other upstream 671474 5300107 ~ 5304429 (-) True G115183
TU144253 other upstream 671474 5300107 ~ 5304388 (-) False G115183
TU144300 other upstream 728213 5356846 ~ 5366754 (-) True AMCG00018251

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00045841 False 4338 mRNA 0.51 28 NC_007135.7 37826492 ~ 37901098 (+)
grasscarp (Ctenopharyngodon idella) CI01000329_00476515_00484343.mRNA True 2770 mRNA 0.49 15 CI01000329 476515 ~ 484953 (+)