RNA id: AMCG00018226


Basic Information

Item Value
RNA id AMCG00018226
length 2247
RNA type mRNA
GC content 0.60
exon number 2
gene id AMCG00018226
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4695362 ~ 4697902 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGAAGGAAGACCTCACCTGCAAGGTCAGCTCCATCTACAAGCACAAGGAGCGTAAGCCCAAGAAGCCCCACTACATCCCTCGGCCATGGGGGAAGCCCTACAACTACAAGTGCTTTCAGTGCCCCTTCACGTGCATGGAGAAGTCCCACCTGTACAACCACATGAAGTACAGCTTGTGCAAGAACTCCCTCTCCCTGCTCATTGAGTCCGATTGGCCCTACAAGAAGGGCAACCTCCTGCATCCCGAGCAGGTCCGCCCCTTACAGACGGGGCCCCGCCTCCGAGGGCCGGGCCGCGAGGAGCTGGATCCGACCCCTCTAAGCGACGACCAATCCAGAGCCGCGCAGTCCGAGGTCTCCTTCGGTGGGGAGGAGGCcgaggagggagaggagcacGGTGACGGGGAGACGAGTCATGGGGAGGGCCCAGAGGAGGCGCAGTCCACCAAAGAAGGCAAGGACCGTGTAGACAATGTCACCCGGAGCAGCACAAAGAGGCCCAAGCAGACCGAGGCTGATTTTGTCATCACAGATGTCTTCTCCCTCGAAGACCAGCTTCTCAATGCCAGGGCGGTGGAGGTGGAAGCAAAGCTAAAACACTATAAACTTTCTAAAACCTGCCTGACTGGCCCTAGCCTTCTCTCTGAGCAGTGGCGTCTGCTGGCAACCAGCCACAGGAAGGCCGGCTCAGAAGGTTCCCTACAAGACAGCGGCTCCATACCTTgttacccccctcccccaacctTTGCAGACTGTCAGGACCCCCCTGGCCTCAATCTCTCAGTCCTGGGAGTGAGCTACCCTCTCAGCCCAGGCCTATTCTCCTACGTCAACCCCGCAGTTGCCGGCACAACCCCAACCCATGCTCAGCTCGCCCAGCTCCCCTTCCTGGCATCTGCCGCCCAACTCATGCAACCTCCCTCCAGCTCGTTACCCCACACAGACAGAACCATCCTGCCACCTCGCTTCTACTACCCTCTGCTGTGTGAGCACGCGTTTGGATCTGTGCAAGAACCCGTAAAGGGAGTCAAGCCTGGCCAGCCCTCCCCAGCCAGCATGGACCCCAAGACCCCGTCCAGCTACCCACCCAAGATCAGCCTGTGGAAAGTCCCAGCTTTGCGCCCCAATGCCAGTGTCATTCCTCCAGCAGCCTGGGCCTCCCATCAGCAAGTCCCAGTGTCCCCTGAGGCTGGGTACAAGGCAGCGGAGGAGAAGGCCCAACAGGCTGTGGGGAAGGAGAGTAAAGTGGGATACTGGAGCCACAAGGCAGCTGTGGACGTCCCTCCATTAAGAGAGCAGGCGAGCAAGAGAACAGGGGCCCCCCTAGAGAGTCAGGAGACCCTTCCAGAGAAGAAGCCCCTCCTGGGATGCACACTGGACCTTCTCAAGAACATCCGGGGTGCCCCATCACTCTCTGTGGCCACAGACAAACTCCTCTTCCACAGCAGTCGGGATTCAGGAGGCCACCCGCAAGAACCATCTCCAGCACTGAAGTCTGGGAAAGCTGTGGACAGAGTGGCGAGGAGAGCAGAAGAGCCAGATGAGTCAGTGGTGCTTTTGGGAGACCTCTCCAAGGCCCTGCAGGAGTACCAGGAGGCCGAGCGCAAGATCTCCCGTCTGGTGAAGGAGGACAGCCCCGGCCAGCGCTACCTGAGGGAGCACCTCTACAAGATCCGTGGAGAGCTCTCACACATCCATCAGGCACTGGAGAAGACAGCCAGGCAGCATGAAGGGCCCCTGGACCTCTCTGTCAAGAAGACTCCAGACTGCAACCCGGGTGGAGGAAGAGGTCAGTGTTCAGAGGGCAAGAGAGGAGTCCCTGAAGAaacagaagaggaggaggcagaagacgaagaagaagaggaggaggaagaggaggaggaggatgagggaAGCGAGACGGATGGCAAGATCCCATCCCAGGAAAGCCGCAGACAGTCCCGGGAAGTCCTGCTCAAGATGAGCCACTCAGGGTTGCCTGGGGTGAGCCTAGGTGCTGTGGTCAAGATGGAGATGGTGTCCCCCAGCGGCCTAGGGCTTCGGCCAATTCCAACGGAGGCAGTGTGGCCAAGTCGGACAACCAAGTGCGAGGCAGACTCTAGTGTGCTTCTGTGTCCCGATGGCCGCTCTGCTCCACTGGTCTTCACTGACTTCAGCGCAAAGAGCCTGAAGAGACCCCCATCCAAAGAGCACCCAGCGGAGGCGCTTTGTCCTCCTAGCCCCCTCACAGCCATCGACCCATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144070 lncRNA downstream 15613 4679540 ~ 4679749 (-) True G115037
TU144051 lncRNA downstream 105294 4589295 ~ 4590068 (-) True G115021
TU143950 lncRNA downstream 308471 4385933 ~ 4386891 (-) True G114941
TU143920 lncRNA downstream 342999 4295311 ~ 4352363 (-) True G114915
TU143817 lncRNA downstream 631114 4060811 ~ 4064248 (-) False G114838
TU144111 lncRNA upstream 123063 4820965 ~ 4821411 (-) True G115071
TU144144 lncRNA upstream 338829 5036731 ~ 5058586 (-) True G115100
TU144191 lncRNA upstream 455150 5153052 ~ 5203873 (-) True G115144
TU144208 lncRNA upstream 530078 5227980 ~ 5243187 (-) True G115157
TU144211 lncRNA upstream 533716 5231618 ~ 5233417 (-) True G115160
AMCG00018230 mRNA downstream 5483 4688815 ~ 4689879 (-) True AMCG00018230
AMCG00018222 mRNA downstream 23006 4666185 ~ 4672356 (-) True AMCG00018222
AMCG00018220 mRNA downstream 43721 4646147 ~ 4651641 (-) True AMCG00018220
AMCG00018219 mRNA downstream 55104 4639704 ~ 4640258 (-) True AMCG00018219
AMCG00018221 mRNA downstream 66729 4622270 ~ 4628633 (-) True AMCG00018221
AMCG00018227 mRNA upstream 38463 4736365 ~ 4744572 (-) True AMCG00018227
AMCG00018228 mRNA upstream 48678 4746580 ~ 4761133 (-) True AMCG00018228
AMCG00018229 mRNA upstream 65826 4763728 ~ 4786482 (-) True AMCG00018229
AMCG00018232 mRNA upstream 125923 4823825 ~ 4826013 (-) True AMCG00018232
AMCG00018239 mRNA upstream 451998 5149900 ~ 5155174 (-) True AMCG00018239
TU144068 other downstream 43750 4646577 ~ 4651612 (-) False AMCG00018220
TU144050 other downstream 107065 4586062 ~ 4588297 (-) True G115020
TU143816 other downstream 631114 4060811 ~ 4064248 (-) False G114838
TU143456 other downstream 2085883 2609145 ~ 2609479 (-) True G114549
TU143313 other downstream 2406500 2281700 ~ 2288862 (-) True G114430
TU144242 other upstream 588484 5286386 ~ 5287873 (-) True G115174
TU144251 other upstream 602205 5300107 ~ 5304429 (-) True G115183
TU144253 other upstream 602205 5300107 ~ 5304388 (-) False G115183
TU144300 other upstream 658944 5356846 ~ 5366754 (-) True AMCG00018251
TU144435 other upstream 1252519 5950421 ~ 5951055 (-) True G115320

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000329_00555504_00558635.mRNA True 2738 mRNA 0.49 2 CI01000329 554827 ~ 558635 (-)