RNA id: TU144211


Basic Information

Item Value
RNA id TU144211
length 1767
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G115160
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5231618 ~ 5233417 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAACAAGCATGTCAGTTTATTCTAAGTGATTCAGACAcagaaaagacacacacactgtgacttCGAATGcttgtctttatttgtatatttttggtCACAAGACATTGACTTTCCCCGTGTTCACCATACAAAACCAAGAACTAGAACATGGACTGTACCATTAATTTGGTATTAAGGCCTTTGCCATCATCAAGTATGGGGATATACATTCCACTGTGTAGACTCTGACCATAGTTGTtgcacagacaaacaaaagggAGCGGGAACTTGAATCGGGAAACTAAGCAATGTGGTTTCATACCAGACCAACACTTCCGTGTATAACCAATAAGTGGAAAGAAAATCCCTATCAGTGGACAAGTAACAGTGTTTTCAGAGTTAAAAAGTAATTGTCTACAGTGGGAAGAACTAGCTGCACTTGCAATTAACAATACTATCAgcttaaattacattacaaccTAATTGAAagctattattttacagaacTGTGAATTCAATACAAACAGGTAGGGGCTGGATTAATCAACGCTTCCAGCTCTCTGCCAATTGCAAACTCCAGACACAGGCCTCGCTCTGTCATTGGTGAGATGCAAGAAGCCTTTGTCAAAGAACCCTCCCACCCGGCGTCCTGGAGGGTGGAGTCCGTCCTGCTTTAATTTAAAcccgtgtctgtctgtctgtctgtctgtctgtctgtctttattaacgttgtatgtttttgtaacaTTCACCCTGAAgctgtaaacaaatgtaaactctCCGGCTCCGGTCGTGTCAGTGGCTTTTCAGTCTTTAATTTTGGAAGGAcggaaattactttttaaaattctaGAACATATTTAAATCCAGGGGGAGGGCgttcctttaatttgttttaaacgaGAGGTATCCCAGCAGTGACTCACTTGGTCATATCTGTTCTGGGGTGGGAACGTCAGTCAGAGGAGATATGTCCCTAAAAAGGCAGTtgttaatctttaaaataaccccCCCCTCTCCCATTATAGGAAGTTGAAATGACTCATTTTCATGAATCAACAAGACTAGTGTTAAATAGTACCTCATAGTTTTTAACTACTGGACTTTAATTAGGTCCGTATTCCCACATGCAGAAACCCTGATCTACAGCCTAACGGTTCGGTCAGACCTGATAATTCAGCAAGGAAAACGGATCGGAGTTGTGCTTTTACTGTAAATTATGAttcccataaaaataaaacctcggTAcggatttaaaaacaatcaatagaCAAAGACAGAATGAATCCACTGCTCTTTAAATAGATACAAGATCCCTCTAAGGATAGcaaaacttaataaataaaataaaacctgctcGTCGCTAGTGTGACACGAGCCAATAACTACTGGattgagaaaaactaaaaatcagaCCCTTGGGTCCCGAGATCAGGCTCGATTATAAGGTCGCCCTGTCAGCATGCTGCAGGACTGATCTGAAGAAAAGCttataaaagaaaattataaaaacacgGAGGGAAATCTTTCGTGTTAAAAAGGAGTTTACAATTCTGGAGATATGTAAGCTGGCCGCTCGGCCTGGATGCGAgagtgcaggtgtgtgtgtgtgtgcgtgtgcgtgtgtgagggAGACCTGCAGGCCGGTGTGGGGGGGCGGTGTGTCCGCCTCACTCGTACACCCAGCGCTCGGTGCAGTCCTCCCAGCAGTGCAGCTCCTGCGGTCTGAACCACAGGGAGATCTCTCTCTGCGCGCTCTGGGTCGAGTCGCTGCCGTGGATCACATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144191 lncRNA downstream 27745 5153052 ~ 5203873 (-) True G115144
TU144144 lncRNA downstream 173032 5036731 ~ 5058586 (-) True G115100
TU144111 lncRNA downstream 410207 4820965 ~ 4821411 (-) True G115071
TU144070 lncRNA downstream 551869 4679540 ~ 4679749 (-) True G115037
TU144051 lncRNA downstream 641550 4589295 ~ 4590068 (-) True G115021
TU144238 lncRNA upstream 45669 5279086 ~ 5279296 (-) True G115170
TU144240 lncRNA upstream 50657 5284074 ~ 5284333 (-) True G115172
TU144241 lncRNA upstream 51528 5284945 ~ 5285516 (-) True G115173
TU144244 lncRNA upstream 58606 5292023 ~ 5292259 (-) True G115176
TU144245 lncRNA upstream 60262 5293679 ~ 5293933 (-) True G115177
AMCG00018248 mRNA downstream 5943 5222887 ~ 5225675 (-) True AMCG00018248
AMCG00018246 mRNA downstream 19263 5206383 ~ 5212355 (-) True AMCG00018246
AMCG00018240 mRNA downstream 60099 5155372 ~ 5171519 (-) True AMCG00018240
AMCG00018239 mRNA downstream 76444 5149900 ~ 5155174 (-) True AMCG00018239
AMCG00018232 mRNA downstream 405605 4823825 ~ 4826013 (-) True AMCG00018232
AMCG00018247 mRNA upstream 203 5233620 ~ 5269405 (-) True AMCG00018247
AMCG00018245 mRNA upstream 45937 5279354 ~ 5283933 (-) True AMCG00018245
AMCG00018253 mRNA upstream 77740 5311157 ~ 5322315 (-) True AMCG00018253
AMCG00018252 mRNA upstream 98824 5332241 ~ 5342984 (-) True AMCG00018252
AMCG00018250 mRNA upstream 116221 5349638 ~ 5354923 (-) True AMCG00018250
TU144068 other downstream 580006 4646577 ~ 4651612 (-) False AMCG00018220
TU144050 other downstream 643321 4586062 ~ 4588297 (-) True G115020
TU143816 other downstream 1167370 4060811 ~ 4064248 (-) False G114838
TU143456 other downstream 2622139 2609145 ~ 2609479 (-) True G114549
TU143313 other downstream 2942756 2281700 ~ 2288862 (-) True G114430
TU144242 other upstream 52969 5286386 ~ 5287873 (-) True G115174
TU144251 other upstream 66690 5300107 ~ 5304429 (-) True G115183
TU144253 other upstream 66690 5300107 ~ 5304388 (-) False G115183
TU144300 other upstream 123429 5356846 ~ 5366754 (-) True AMCG00018251
TU144435 other upstream 717004 5950421 ~ 5951055 (-) True G115320

Expression Profile