RNA id: AMCG00018246


Basic Information

Item Value
RNA id AMCG00018246
length 1306
RNA type mRNA
GC content 0.56
exon number 7
gene id AMCG00018246
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5206383 ~ 5212355 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAACGACTTCCCGGACGATGATTGGACCGGATCTGTGCTAATCAGTATGACGTCCGAGACTTGGCAAGAGCTGTGCGGGCCACACGGAAGTCAGGCGGTTTAACGTCAGCATGGATATTGATGAGGATAAGGGGAATCTGGCACAAGTCCGGCATGTTGTGTTGGTGCTGTCGGGCAAAGGGGGAGTGGGCAAGAGCACGCTGACCACCGAGCTGGCACTGGCACTCAGGCACGCCGGCAAGAAGGTGGGGATCCTGGACATCGACCTGTGTGGCCCCAGTATCCCGCGCATGCTGAACGTGGGTCGGCAGGAGGTGCACCAGTGTGATGCTGGCTGGGTGCCGGTCTACACCGACGTGCACAAGAGCCTGGCCCTGATGTCCATCGGCTTCCTGCTCGAGAACCCCGATGATGCCGTGGTCTGGAGAGGCCCCAAGAAAACGGCTTTGATTGGTCAGTTTGTGTCAGACGTGGCATGGGGGGAACTGGACTACCTGCTAGTGGACACACCGCCCGGCACCTCAGACGAGCATCTGGCCGTGGTTGAGAACCTGCGCAAACACAAGGTCGATGGCGCCATCCTGGTCACCACACCGCAGGCGGTGTCCACGGGAGACGTGAGGCGGGAGATCACGTTCTGTAAGAAGACAGGCCTGCGCGTCCTGGGCATCGTGGAGAACATGAGCGGGTTCGTCTGCCCGCATTGCTCGGTGAGTCTCGCCGGGGCCTGCCGTGCCGCTCTGCGTGAGAGTCAGGAGCAGGGGGAATGTACGAACATATTTTCCaaagggggaggagaggagctGGCCAGGGTGGCTGGGTTGCCGTTCTTAGGCTGTGTGCCCCTGGATCCTCAGCTCAGCTCCTGTGTGGAAGAAGGCAGAGACTTCCTGCAGGCTTTCCCACAGAGCGCCACCTTCAGCGCGGTCAGCCAGATCGCCCAGGCGGTGATGGACGGCACGGCCCACCAGGCCTGAGATGCCGCCAGGGACGCGCTCCTCCACAGCCGGCTTCCCCCCAGTTCATTCCCGTCCTCAATAAAGCTTTCGTTTTGTACACCACTACAGAGGGGAGGTGATCTTTTTCTGAATTTAATGAGCTTAGGCTATATTGTAATCTCACTACACAGGTGAATCTTGTCTGTAGAAGAGgtgtaaaaagcaaaaacaaatcacgtatgtatatataatgttatactggtacattttagtttaaattcaCCCATGGACTCTGAACTAGTGTTCCCTTACATGTGAGCTATTAAAGCAACTGTGTTTGACCTTGTGGAATAAATGGTTTTGCAGCA

Function

GO:

id name namespace
GO:0016226 iron-sulfur cluster assembly biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144191 lncRNA downstream 2510 5153052 ~ 5203873 (-) True G115144
TU144144 lncRNA downstream 147797 5036731 ~ 5058586 (-) True G115100
TU144111 lncRNA downstream 384972 4820965 ~ 4821411 (-) True G115071
TU144070 lncRNA downstream 526634 4679540 ~ 4679749 (-) True G115037
TU144051 lncRNA downstream 616315 4589295 ~ 4590068 (-) True G115021
TU144208 lncRNA upstream 15625 5227980 ~ 5243187 (-) True G115157
TU144211 lncRNA upstream 19263 5231618 ~ 5233417 (-) True G115160
TU144238 lncRNA upstream 66731 5279086 ~ 5279296 (-) True G115170
TU144240 lncRNA upstream 71719 5284074 ~ 5284333 (-) True G115172
TU144241 lncRNA upstream 72590 5284945 ~ 5285516 (-) True G115173
AMCG00018240 mRNA downstream 34864 5155372 ~ 5171519 (-) True AMCG00018240
AMCG00018239 mRNA downstream 51209 5149900 ~ 5155174 (-) True AMCG00018239
AMCG00018232 mRNA downstream 380370 4823825 ~ 4826013 (-) True AMCG00018232
AMCG00018229 mRNA downstream 419901 4763728 ~ 4786482 (-) True AMCG00018229
AMCG00018228 mRNA downstream 445250 4746580 ~ 4761133 (-) True AMCG00018228
AMCG00018248 mRNA upstream 10532 5222887 ~ 5225675 (-) True AMCG00018248
AMCG00018247 mRNA upstream 21265 5233620 ~ 5269405 (-) True AMCG00018247
AMCG00018245 mRNA upstream 66999 5279354 ~ 5283933 (-) True AMCG00018245
AMCG00018253 mRNA upstream 98802 5311157 ~ 5322315 (-) True AMCG00018253
AMCG00018252 mRNA upstream 119886 5332241 ~ 5342984 (-) True AMCG00018252
TU144068 other downstream 554771 4646577 ~ 4651612 (-) False AMCG00018220
TU144050 other downstream 618086 4586062 ~ 4588297 (-) True G115020
TU143816 other downstream 1142135 4060811 ~ 4064248 (-) False G114838
TU143456 other downstream 2596904 2609145 ~ 2609479 (-) True G114549
TU143313 other downstream 2917521 2281700 ~ 2288862 (-) True G114430
TU144242 other upstream 74031 5286386 ~ 5287873 (-) True G115174
TU144251 other upstream 87752 5300107 ~ 5304429 (-) True G115183
TU144253 other upstream 87752 5300107 ~ 5304388 (-) False G115183
TU144300 other upstream 144491 5356846 ~ 5366754 (-) True AMCG00018251
TU144435 other upstream 738066 5950421 ~ 5951055 (-) True G115320

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00046731 False 1057 mRNA 0.49 7 NC_007135.7 39178348 ~ 39186185 (-)