RNA id: TU456702


Basic Information

Item Value
RNA id TU456702
length 344
lncRNA type read_through
GC content 0.53
exon number 2
gene id G398220
representative True

Chromosome Information

Item Value
chromosome id CI01000242
NCBI id null
chromosome length 629286
location 155020 ~ 173018 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACTGAAGACTGGAGGAGCAGTCGATGGTTCGATCATGACCCACATCAGACACGCTGAAGATCCAGGTGCCCAGCAGGTCCTCATAGGTGCAGTTGGCAGGAGTATCTGCCGCAGACCCGCCGATAAACGCAAACAAAACAATGACAGAGAACGCGCGCATCCTTATGACGGCCCGACCGCAGTATAACTGCTGTATAACGATATAACTGATTTAACTGGACAGCACGCGGGGGTTTTTTTAAATGACCGGACGCAAGGAAACAGGCGCGTGTCCTTCTCGTCCTTCTCGTCCTTCCGCGTATCTGCAGCACTGAAACTCTCTGCTGATCAGCCGCGTGCTAGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU456724 lncRNA downstream 92687 62071 ~ 62333 (-) True G398241
TU456720 lncRNA downstream 101098 53115 ~ 53922 (-) True CI01000242_00054328_00061612
TU456719 lncRNA downstream 103760 50873 ~ 51260 (-) True G398236
TU456716 lncRNA downstream 106525 48274 ~ 48495 (-) True G398234
TU456713 lncRNA downstream 111046 43465 ~ 43974 (-) True G398231
TU456761 lncRNA upstream 69404 242422 ~ 247743 (-) True G398277
TU456783 lncRNA upstream 90621 265230 ~ 267422 (-) True G398286
TU456704 lncRNA upstream 95950 268968 ~ 270424 (-) True G398222
TU456774 lncRNA upstream 127129 355553 ~ 355566 (-) True G398279
TU456766 lncRNA upstream 128907 343301 ~ 343531 (-) False G398279
CI01000242_00054328_00061612.mRNA mRNA downstream 93054 53221 ~ 61966 (-) False CI01000242_00054328_00061612
CI01000242_00037939_00038523.mRNA mRNA downstream 116081 37552 ~ 38939 (-) True CI01000242_00037939_00038523
CI01000242_00025780_00032789.mRNA mRNA downstream 122231 25722 ~ 32789 (-) True CI01000242_00025780_00032789
CI01000242_00209467_00209713.mRNA mRNA upstream 36241 209259 ~ 209713 (-) True CI01000242_00209467_00209713
CI01000242_00230847_00255610.mRNA mRNA upstream 57829 230847 ~ 256208 (-) True CI01000242_00230847_00255610
CI01000242_00264251_00267773.mRNA mRNA upstream 90195 263213 ~ 267773 (-) False CI01000242_00264251_00267773
CI01000242_00272088_00293729.mRNA mRNA upstream 98388 271406 ~ 293729 (-) True CI01000242_00272088_00293729
CI01000242_00300190_00331091.mRNA mRNA upstream 127140 300158 ~ 331091 (-) False CI01000242_00300190_00331091
TU456773 other upstream 128907 331321 ~ 331376 (-) False G398279
TU456775 other upstream 128907 301925 ~ 312673 (-) False CI01000242_00300190_00331091
TU456764 other upstream 147240 320258 ~ 330665 (-) False CI01000242_00300190_00331091
TU456765 other upstream 147240 320258 ~ 330665 (-) True CI01000242_00300190_00331091

Expression Profile