RNA id: TU456716


Basic Information

Item Value
RNA id TU456716
length 222
lncRNA type intronic
GC content 0.49
exon number 1
gene id G398234
representative True

Chromosome Information

Item Value
chromosome id CI01000242
NCBI id null
chromosome length 629286
location 48274 ~ 48495 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTTATGTGAGGAAATGATGTCATTCATCCTGACTGGACGGCGAGGCTTGTTAAAGCCTGTCACCTGACACCCCGCCCACACAAAGCTGGAAAACTGCTGTTTTCCCAGGAAATTACAGGGTCAGAGGGTTGTGGCACTTCACCTCCCAATATACAGCGTTGTGCACTGAGGGATCATGACCTTTGTGAACACCGCAGATATTTTTCCCATAACACAGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU456713 lncRNA downstream 4300 43465 ~ 43974 (-) True G398231
TU456711 lncRNA downstream 5635 42398 ~ 42639 (-) True G398229
TU456688 lncRNA downstream 13153 34798 ~ 35121 (-) True G398211
TU456719 lncRNA upstream 2378 50873 ~ 51260 (-) True G398236
TU456720 lncRNA upstream 4620 53115 ~ 53922 (-) True CI01000242_00054328_00061612
TU456724 lncRNA upstream 13576 62071 ~ 62333 (-) True G398241
TU456702 lncRNA upstream 106525 155020 ~ 173018 (-) True G398220
TU456696 lncRNA upstream 109427 157922 ~ 164528 (-) False G398216
CI01000242_00037939_00038523.mRNA mRNA downstream 9335 37552 ~ 38939 (-) True CI01000242_00037939_00038523
CI01000242_00025780_00032789.mRNA mRNA downstream 15485 25722 ~ 32789 (-) True CI01000242_00025780_00032789
CI01000242_00054328_00061612.mRNA mRNA upstream 4726 53221 ~ 61966 (-) False CI01000242_00054328_00061612
CI01000242_00209467_00209713.mRNA mRNA upstream 160764 209259 ~ 209713 (-) True CI01000242_00209467_00209713
CI01000242_00230847_00255610.mRNA mRNA upstream 182352 230847 ~ 256208 (-) True CI01000242_00230847_00255610
CI01000242_00264251_00267773.mRNA mRNA upstream 214718 263213 ~ 267773 (-) False CI01000242_00264251_00267773
CI01000242_00272088_00293729.mRNA mRNA upstream 222911 271406 ~ 293729 (-) True CI01000242_00272088_00293729
TU456773 other upstream 253430 331321 ~ 331376 (-) False G398279
TU456775 other upstream 253430 301925 ~ 312673 (-) False CI01000242_00300190_00331091
TU456764 other upstream 271763 320258 ~ 330665 (-) False CI01000242_00300190_00331091
TU456765 other upstream 271763 320258 ~ 330665 (-) True CI01000242_00300190_00331091

Expression Profile