RNA id: TU464055


Basic Information

Item Value
RNA id TU464055
length 774
lncRNA type antisense_over
GC content 0.52
exon number 2
gene id G403714
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 93601 ~ 116099 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCAAAGCTGACTTTAAGCGCTGGGGTCAGATACTCTGCAACCTTTTTCCAGTTCCCATGATGAGTCGGGATCCACGCCATTACGGCACATGCATATTCTCCAGCGTCTGCGTCAGTCGTGTGAAGGAGGCGGAGCTTGAATGTGGAAGGTTCCGTTCGGGTCGCTGTAATAAGCCCTGCCTGTATGCGGCTCTTGTACATCTTGCCTGGCACAAGGGTTCCGTTCTCATCTAATGACGCGATAGTCTGAGTAGATACTGGAACGTTACCGGGCAGAGCGTCTCTGTACAGCCACGACACTCCCAACTGTCCGCTACGAAGGTTGGACACGTTCGTAACTTTGCATTCCAACTCCGTCGGTTCACCGAAGAACTTTGCGTTCACAGATGAATTTAGAACAACGGTGTATTCTGGAATTTGCTTAATAACGTGAACTCGTACAGGGTCAGAAATCTTCTCCGCAGCCTTGTACCATCGTCCACTATCGTGCTGAACCCACATGCTCACTTTACATGAATAGAGTCCAGCGTCAGACATCTCCACACCGTGAACTTTGATTTGGAAATCCCACTTCCCCAAGCGTCTCACGTCCACCACATCAGATGTGTTGGTCAGCACGCCGTCACGACTCAGGTGGGCCAGAGTACGGCTGGCGTTCAACAGCCACGTCACTTCCAGGTCAATGGACGCCGCGGAGTCAGCAGAGACCGAACAGGTGAGGAGCAGCGTTTCTCCTGTGGATAATGTGCTGCCGTCCTGCACGTGAACAGTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464060 lncRNA downstream 3637 97454 ~ 100533 (-) False G403714
TU464056 lncRNA downstream 6385 93601 ~ 97785 (-) False G403714
TU464075 lncRNA upstream 16514 132613 ~ 136933 (-) True G403725
TU464098 lncRNA upstream 117941 234040 ~ 234262 (-) True G403737
TU464136 lncRNA upstream 123438 239537 ~ 239755 (-) True G403772
TU464099 lncRNA upstream 124114 240213 ~ 240461 (-) True G403738
TU464137 lncRNA upstream 125051 241150 ~ 242770 (-) True G403773
CI01000299_00169255_00170695.mRNA mRNA upstream 53124 169223 ~ 170986 (-) True CI01000299_00169255_00170695
CI01000299_00185106_00209299.mRNA mRNA upstream 68675 184774 ~ 209299 (-) True CI01000299_00185106_00209299
CI01000299_00448948_00449565.mRNA mRNA upstream 332764 448863 ~ 449757 (-) True CI01000299_00448948_00449565
CI01000299_00452374_00452868.mRNA mRNA upstream 335242 451341 ~ 452868 (-) True CI01000299_00452374_00452868
CI01000299_00670925_00672195.mRNA mRNA upstream 554581 670680 ~ 673625 (-) False CI01000299_00670925_00672195
TU464604 other upstream 554735 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU464792 other upstream 954508 1070607 ~ 1075891 (-) True G404372
TU465225 other upstream 1543556 1659655 ~ 1660000 (-) True G404784
TU465428 other upstream 1739540 1855639 ~ 1880988 (-) True G404976
TU465509 other upstream 1901588 2017687 ~ 2018050 (-) True G405053

Expression Profile