RNA id: TU464140


Basic Information

Item Value
RNA id TU464140
length 415
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G403776
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 244590 ~ 245004 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGCATAATGCTACAGCTGGTTGAAGGTTCGCTTACTTGTAGTTAACTTTAAGGACTGTAGTCCAAAACTACCAGCAGCTTGCTTGCTAACATATTAGCCCCAATGTTATAAGTTCTGTTTTATTTTTCCTGTATCGGAGTCGGAGAATTTCACTCTGTGCTTGGGGCAGCTCTGACAAACACTGCAGCGTGATTGAGGGCTACGTTACTCCGACAAATATTGGCAATATTAAGAGGATTTGGCATTTCCAATTAATGTAAGCCTGTTACATTCTTCTAGTCTATTATTATTACTATTAGGTAAGCTACTTTTATTATTAAATTAATATTATAATAAATTTGCCCTGCAATAATTTCACAGCGCATCACCGCATAACTGACGTGCTGTGAGGATAATAAAAGATTAGGCTATCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464139 lncRNA downstream 585 243712 ~ 244005 (-) True G403775
TU464138 lncRNA downstream 969 242826 ~ 243621 (-) True G403774
TU464137 lncRNA downstream 1820 241150 ~ 242770 (-) True G403773
TU464099 lncRNA downstream 4129 240213 ~ 240461 (-) True G403738
TU464136 lncRNA downstream 4835 239537 ~ 239755 (-) True G403772
TU464141 lncRNA upstream 493 245497 ~ 245771 (-) True G403777
TU464142 lncRNA upstream 954 245958 ~ 246247 (-) True G403778
TU464109 lncRNA upstream 1869 246873 ~ 247351 (-) True G403748
TU464143 lncRNA upstream 3543 248547 ~ 248775 (-) True G403779
TU464144 lncRNA upstream 4822 249826 ~ 250026 (-) True G403780
CI01000299_00185106_00209299.mRNA mRNA downstream 35291 184774 ~ 209299 (-) True CI01000299_00185106_00209299
CI01000299_00169255_00170695.mRNA mRNA downstream 73604 169223 ~ 170986 (-) True CI01000299_00169255_00170695
CI01000299_00448948_00449565.mRNA mRNA upstream 203859 448863 ~ 449757 (-) True CI01000299_00448948_00449565
CI01000299_00452374_00452868.mRNA mRNA upstream 206337 451341 ~ 452868 (-) True CI01000299_00452374_00452868
CI01000299_00670925_00672195.mRNA mRNA upstream 425676 670680 ~ 673625 (-) False CI01000299_00670925_00672195
CI01000299_01003547_01034507.mRNA mRNA upstream 758315 1003319 ~ 1034812 (-) True CI01000299_01003547_01034507
CI01000299_01057889_01063623.mRNA mRNA upstream 812816 1057820 ~ 1063623 (-) True CI01000299_01057889_01063623
TU464604 other upstream 425830 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU464792 other upstream 825603 1070607 ~ 1075891 (-) True G404372
TU465225 other upstream 1414651 1659655 ~ 1660000 (-) True G404784
TU465428 other upstream 1610635 1855639 ~ 1880988 (-) True G404976
TU465509 other upstream 1772683 2017687 ~ 2018050 (-) True G405053

Expression Profile