RNA id: TU464109


Basic Information

Item Value
RNA id TU464109
length 479
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G403748
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 246873 ~ 247351 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTCTGTGTACTTCTCTATGTATGTTGATGATAATGCAAGGGAGATAGAGAGAGTTTATGGATAATATTTTAATGCACACTTGCACTGTTTTATTAAGCTCTTACAGTGATTTTCTAGAGTGAAAACGGACGCTTCATCTTTTGTGTGAAGTACAATAAACGTCATAAAACTCATCGGTAAAGTTGAACGGGGTCCGGTACAACAGGCTTGTACTAATATAGTGGATAAAAACAAGAAGACAATAAGTTATAAACGTAATTGAACTAAACTATACCTGTTCTATCTCCATGCAGCAAATATTCGCAGTTTCTGACACAGCACGCCCTGACTGAATCCTGACACCAGAGAATCAGCTCTTGAAGCTCCGCCCTCTTAGGCCGAGCGCAGCAGCTTATTTGCATTTAAAGGGCACACCCTGAAATGGCGTGTTTTTGCTCAACCCCAAAAAGTGTCAATTTTAACATGCTATACAAAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464142 lncRNA downstream 626 245958 ~ 246247 (-) True G403778
TU464141 lncRNA downstream 1102 245497 ~ 245771 (-) True G403777
TU464140 lncRNA downstream 1869 244590 ~ 245004 (-) True G403776
TU464139 lncRNA downstream 2868 243712 ~ 244005 (-) True G403775
TU464138 lncRNA downstream 3252 242826 ~ 243621 (-) True G403774
TU464143 lncRNA upstream 1196 248547 ~ 248775 (-) True G403779
TU464144 lncRNA upstream 2475 249826 ~ 250026 (-) True G403780
TU464145 lncRNA upstream 4487 251838 ~ 252203 (-) True G403781
TU464146 lncRNA upstream 6179 253530 ~ 253859 (-) True G403782
TU464087 lncRNA upstream 7317 254668 ~ 311830 (-) False G403734
CI01000299_00185106_00209299.mRNA mRNA downstream 37574 184774 ~ 209299 (-) True CI01000299_00185106_00209299
CI01000299_00169255_00170695.mRNA mRNA downstream 75887 169223 ~ 170986 (-) True CI01000299_00169255_00170695
CI01000299_00448948_00449565.mRNA mRNA upstream 201512 448863 ~ 449757 (-) True CI01000299_00448948_00449565
CI01000299_00452374_00452868.mRNA mRNA upstream 203990 451341 ~ 452868 (-) True CI01000299_00452374_00452868
CI01000299_00670925_00672195.mRNA mRNA upstream 423329 670680 ~ 673625 (-) False CI01000299_00670925_00672195
CI01000299_01003547_01034507.mRNA mRNA upstream 755968 1003319 ~ 1034812 (-) True CI01000299_01003547_01034507
CI01000299_01057889_01063623.mRNA mRNA upstream 810469 1057820 ~ 1063623 (-) True CI01000299_01057889_01063623
TU464604 other upstream 423483 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU464792 other upstream 823256 1070607 ~ 1075891 (-) True G404372
TU465225 other upstream 1412304 1659655 ~ 1660000 (-) True G404784
TU465428 other upstream 1608288 1855639 ~ 1880988 (-) True G404976
TU465509 other upstream 1770336 2017687 ~ 2018050 (-) True G405053

Expression Profile