RNA id: TU464146


Basic Information

Item Value
RNA id TU464146
length 330
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G403782
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 253530 ~ 253859 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAGAGACAGATAGATGACAATGACAGACAGATAGAACAACACAGAAAGACATATGGAATGACAGACAGACAGATAGAATGACAGACAGAACGACAGACAGATAGAACGAGACAGACAGATAGAAGATAGACAGATAGAATTACAGACAGAATGAAAGATAGAACAACAGACAGAAGGAAAGAGACAAATAAAATGACAGACAGACAGATAGAATTGCAGACAGAATGACAGACAGACAGATAGTAGGACAGACTGACAGACAGATAGAATGGCAGACAGACAGATAGACAATGGCAGACAGACAGATAGAATGACATATAGAAAGAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464145 lncRNA downstream 1327 251838 ~ 252203 (-) True G403781
TU464144 lncRNA downstream 3504 249826 ~ 250026 (-) True G403780
TU464143 lncRNA downstream 4755 248547 ~ 248775 (-) True G403779
TU464109 lncRNA downstream 6179 246873 ~ 247351 (-) True G403748
TU464142 lncRNA downstream 7283 245958 ~ 246247 (-) True G403778
TU464087 lncRNA upstream 809 254668 ~ 311830 (-) False G403734
TU464148 lncRNA upstream 2753 256612 ~ 257664 (-) True G403784
TU464096 lncRNA upstream 31179 285038 ~ 287194 (-) True G403735
TU464165 lncRNA upstream 34825 288684 ~ 288993 (-) True G403801
TU464091 lncRNA upstream 36082 289941 ~ 331840 (-) False G403734
CI01000299_00185106_00209299.mRNA mRNA downstream 44231 184774 ~ 209299 (-) True CI01000299_00185106_00209299
CI01000299_00169255_00170695.mRNA mRNA downstream 82544 169223 ~ 170986 (-) True CI01000299_00169255_00170695
CI01000299_00448948_00449565.mRNA mRNA upstream 195004 448863 ~ 449757 (-) True CI01000299_00448948_00449565
CI01000299_00452374_00452868.mRNA mRNA upstream 197482 451341 ~ 452868 (-) True CI01000299_00452374_00452868
CI01000299_00670925_00672195.mRNA mRNA upstream 416821 670680 ~ 673625 (-) False CI01000299_00670925_00672195
CI01000299_01003547_01034507.mRNA mRNA upstream 749460 1003319 ~ 1034812 (-) True CI01000299_01003547_01034507
CI01000299_01057889_01063623.mRNA mRNA upstream 803961 1057820 ~ 1063623 (-) True CI01000299_01057889_01063623
TU464604 other upstream 416975 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU464792 other upstream 816748 1070607 ~ 1075891 (-) True G404372
TU465225 other upstream 1405796 1659655 ~ 1660000 (-) True G404784
TU465428 other upstream 1601780 1855639 ~ 1880988 (-) True G404976
TU465509 other upstream 1763828 2017687 ~ 2018050 (-) True G405053

Expression Profile