RNA id: TU464713


Basic Information

Item Value
RNA id TU464713
length 332
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G404293
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 1125736 ~ 1127433 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGAGCCGCCCTTCATTCACCCACATGGTTCACGGCAGGTCGCGTTCGCGCCACTTTTGCAATTTTACTATGATTAAGAAAGTCGTTTAAGGAGAAGTTTCACTTTGCTTTGGACTCGCGCCGCGTGCGTTACATTCGATCGCGGTCTACTTTTAAGTTTACGCACCAGTTTCGCAGATTTGTCCAGAGCAGTGGCAGTAAACGGCAAGTGAGTGAAGATGGTGGATTTCACTGAAACCTCAAAGATGGGAGTAGCTCCCCGCAAGTTCTTTGGAGACTTTCATCCATTGGACTTTGTTGATGTGAAATATGAGATGGACGTGGTTGGTGTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464603 lncRNA downstream 400448 723546 ~ 725288 (-) True G404190
TU464580 lncRNA downstream 520154 605073 ~ 605582 (-) True G404169
TU464578 lncRNA downstream 524735 596568 ~ 601001 (-) True G404168
TU464576 lncRNA downstream 539389 586146 ~ 586347 (-) True G404166
TU464572 lncRNA downstream 569673 555853 ~ 556063 (-) True G404162
TU464800 lncRNA upstream 3610 1131043 ~ 1131262 (-) True G404380
TU464878 lncRNA upstream 20023 1147456 ~ 1147727 (-) True G404457
TU464916 lncRNA upstream 70008 1197441 ~ 1198241 (-) True G404484
TU464918 lncRNA upstream 71924 1199357 ~ 1200671 (-) True G404486
TU464925 lncRNA upstream 84274 1211707 ~ 1211930 (-) True G404493
CI01000299_01114487_01122666.mRNA mRNA downstream 1506 1113750 ~ 1124230 (-) True CI01000299_01114487_01122666
CI01000299_01057889_01063623.mRNA mRNA downstream 62113 1057820 ~ 1063623 (-) True CI01000299_01057889_01063623
CI01000299_01003547_01034507.mRNA mRNA downstream 90924 1003319 ~ 1034812 (-) True CI01000299_01003547_01034507
CI01000299_00670925_00672195.mRNA mRNA downstream 452111 670680 ~ 673625 (-) False CI01000299_00670925_00672195
CI01000299_00452374_00452868.mRNA mRNA downstream 672868 451341 ~ 452868 (-) True CI01000299_00452374_00452868
CI01000299_01222994_01268707.mRNA mRNA upstream 95426 1222859 ~ 1270326 (-) True CI01000299_01222994_01268707
CI01000299_01338052_01368900.mRNA mRNA upstream 210439 1337872 ~ 1369376 (-) True CI01000299_01338052_01368900
CI01000299_01419938_01421048.mRNA mRNA upstream 292096 1419529 ~ 1421048 (-) True CI01000299_01419938_01421048
CI01000299_01693958_01696561.mRNA mRNA upstream 565491 1692924 ~ 1697305 (-) True CI01000299_01693958_01696561
CI01000299_02670695_02682116.mRNA mRNA upstream 1543163 2670596 ~ 2682116 (-) True CI01000299_02670695_02682116
TU464792 other downstream 49845 1070607 ~ 1075891 (-) True G404372
TU464604 other downstream 452880 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU465225 other upstream 532222 1659655 ~ 1660000 (-) True G404784
TU465428 other upstream 728206 1855639 ~ 1880988 (-) True G404976
TU465509 other upstream 890254 2017687 ~ 2018050 (-) True G405053
TU467961 other upstream 3013685 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU468104 other upstream 3348561 4475994 ~ 4550721 (-) True G407413

Expression Profile