RNA id: TU468666


Basic Information

Item Value
RNA id TU468666
length 778
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G407884
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6025025 ~ 6025802 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTAAATTCTGTTGGGCAAGTGTCAAAATTTTGATAGTAAGTGGCAAAAAAATGCGATTAAAGTCGGGTGTGGGTCATTATTTATGTGCTCATAAATATGTCTCCTAAATGAAATTAGATATTTTCACCACATTTGACACTTATGTATGGGGGCACTCTGAGGACAGACAAAAAAAAAGCGGTGGGACTGCACCACTTGGTGGCGCTATAATTGAACAAAACATGAAATTGGCTCCAACTTCAGTACTGTTGGTCTGATTGACTTCAATATTGGCATGCAGTGTCTTTGTCTCCATTGCTATCATAGTCCATTATGACATTGTTGGTCTGCTGCTAGCTTCCTTGTTTGCTTCTGTTGTGCTCGACCCCTTAATTGCTGCTTGCAGCTATATTTTCATTTTACTGATGTAATCTTCATGACATTAACTTGCATTAAATGATTGGTGTGATTTTGGAAAGCTGCATCTCCTACAACAACAGCCTAAAATAACAACTTAATACACATTTGAGTTTTTATTTTAGAGGTGGAGGAAGGAACTTTGAAAGATTATTAAGACATAATCATTGTTTTTTAGTCACTGATTAATCATTTAAGACCAGGAACGTGAATTAAGAGAGTAAATAGAGTCCGTCTTAATTTGATGTTGACTTTAAAAACATAAATATACCATTAAAGTGTCAGATACAGTCTATAGGATGATTTAAAATTATATATACAGTATCTCACAGAAGTGAATACACCCCTCACATTTTTGTAAATATTTCATTATATCTTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468662 lncRNA downstream 1361 6018542 ~ 6023664 (-) True G407881
TU468604 lncRNA downstream 55469 5963680 ~ 5969556 (-) True G407825
TU468606 lncRNA downstream 79000 5945375 ~ 5946025 (-) True G407827
TU468639 lncRNA downstream 94479 5929639 ~ 5930546 (-) True G407858
TU468580 lncRNA downstream 126554 5821575 ~ 5821591 (-) True G407801
TU468667 lncRNA upstream 313 6026115 ~ 6026325 (-) True G407885
TU468589 lncRNA upstream 4474 6030276 ~ 6030985 (-) True G407810
TU468608 lncRNA upstream 61362 6087164 ~ 6088221 (-) True G407829
TU468762 lncRNA upstream 62700 6088502 ~ 6088726 (-) True G407967
TU468744 lncRNA upstream 65689 6091491 ~ 6091881 (-) True G407949
CI01000299_05974659_05985294.mRNA mRNA downstream 39419 5974391 ~ 5985606 (-) True CI01000299_05974659_05985294
CI01000299_05946615_05949088.mRNA mRNA downstream 75791 5946333 ~ 5949234 (-) True CI01000299_05946615_05949088
CI01000299_05927821_05933216.mRNA mRNA downstream 90193 5927314 ~ 5934832 (-) True CI01000299_05927821_05933216
CI01000299_05919510_05924061.mRNA mRNA downstream 100397 5919128 ~ 5924628 (-) False CI01000299_05919510_05924061
CI01000299_05896205_05898855.mRNA mRNA downstream 126168 5896043 ~ 5898857 (-) False CI01000299_05896205_05898855
CI01000299_06037407_06054548.mRNA mRNA upstream 10415 6036217 ~ 6054548 (-) True CI01000299_06037407_06054548
CI01000299_06130943_06144384.mRNA mRNA upstream 103271 6129073 ~ 6144868 (-) True CI01000299_06130943_06144384
CI01000299_06145156_06154533.mRNA mRNA upstream 119153 6144955 ~ 6154533 (-) True CI01000299_06145156_06154533
CI01000299_06185794_06195015.mRNA mRNA upstream 159686 6185488 ~ 6195015 (-) True CI01000299_06185794_06195015
CI01000299_06197276_06199730.mRNA mRNA upstream 170804 6196606 ~ 6199730 (-) True CI01000299_06197276_06199730
TU468578 other downstream 100892 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other downstream 189036 5835889 ~ 5835989 (-) True G407805
TU468421 other downstream 568917 5455914 ~ 5456108 (-) True G407665
TU468235 other downstream 1096207 4925968 ~ 4928818 (-) True G407509
TU468104 other downstream 1474304 4475994 ~ 4550721 (-) True G407413
TU468694 other upstream 506199 6532144 ~ 6534655 (-) True G407899

Expression Profile