RNA id: TU468578


Basic Information

Item Value
RNA id TU468578
length 356
RNA type TUCP
GC content 0.46
exon number 2
gene id CI01000299_05919510_05924061
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5919128 ~ 5924628 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATCACACACTAGTAAACATCCGCTGGAGTTCAAACGCGTTAATTTTGTTCATAATTGTAAGTTAAATCGTCATGAGCTATTTTCTTCCTAAACTGTCGTGTAAAAAAGACATCGATGACGCGATTAAAACGGTCGCTGAGAAGGTTTTAGTGCTGCGATTCGGCAGAGATGAAGATTCCGTGTGTCTGCAGCTGGACGAGATCCTGTCAAAGACGGCTCATGATCTGAGTAACATGGCGAGTGTTTATCTGGTGGATGTGGACACGGCGCCGGTTTATACCAGATACTTCGACATCAGCTTCATTCCCTCAACAGTGTTCTTCTTCAACGGGCAGCACATGAAGGTCGACTACGGATCTCCAGATCATACCAAGTTTGTGGGAAGCTTCAAAACCAAACAGGACTTCATGGATCTGATTGAAGTGATCTATCACGGCGCCATGAGAGGTAAACTGATCGTCCGAAGCCCGATAGACCCGAGAAACATTCCCAAATATGATCTGCTGTACCACGA

Function

GO:

id name namespace
GO:0046540 U4/U6 x U5 tri-snRNP complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468628 lncRNA downstream 43028 5774249 ~ 5775541 (-) True G407848
TU468538 lncRNA downstream 178703 5634840 ~ 5639866 (-) True G407764
TU468500 lncRNA downstream 263724 5552628 ~ 5554845 (-) True G407734
TU468429 lncRNA downstream 355397 5456864 ~ 5463172 (-) True CI01000299_05457285_05462908
TU468426 lncRNA downstream 400198 5413334 ~ 5418371 (-) True G407669
TU468639 lncRNA upstream 5506 5929639 ~ 5930546 (-) True G407858
TU468606 lncRNA upstream 21242 5945375 ~ 5946025 (-) True G407827
TU468604 lncRNA upstream 39547 5963680 ~ 5969556 (-) True G407825
TU468662 lncRNA upstream 94409 6018542 ~ 6023664 (-) True G407881
TU468666 lncRNA upstream 100892 6025025 ~ 6025802 (-) True G407884
CI01000299_05802706_05815472.mRNA mRNA downstream 3097 5802504 ~ 5815472 (-) True CI01000299_05802706_05815472
CI01000299_05739937_05770480.mRNA mRNA downstream 47762 5739808 ~ 5770807 (-) True CI01000299_05739937_05770480
CI01000299_05602070_05604608.mRNA mRNA downstream 213954 5601983 ~ 5604615 (-) True CI01000299_05602070_05604608
CI01000299_05512316_05521322.mRNA mRNA downstream 297247 5512051 ~ 5521322 (-) True CI01000299_05512316_05521322
CI01000299_05478688_05502027.mRNA mRNA downstream 315301 5477482 ~ 5503268 (-) True CI01000299_05478688_05502027
CI01000299_05927821_05933216.mRNA mRNA upstream 3181 5927314 ~ 5934832 (-) True CI01000299_05927821_05933216
CI01000299_05946615_05949088.mRNA mRNA upstream 22200 5946333 ~ 5949234 (-) True CI01000299_05946615_05949088
CI01000299_05974659_05985294.mRNA mRNA upstream 50258 5974391 ~ 5985606 (-) True CI01000299_05974659_05985294
CI01000299_06037407_06054548.mRNA mRNA upstream 112084 6036217 ~ 6054548 (-) True CI01000299_06037407_06054548
CI01000299_06130943_06144384.mRNA mRNA upstream 204940 6129073 ~ 6144868 (-) True CI01000299_06130943_06144384
TU468421 other downstream 362461 5455914 ~ 5456108 (-) True G407665
TU468235 other downstream 889751 4925968 ~ 4928818 (-) True G407509
TU468104 other downstream 1267848 4475994 ~ 4550721 (-) True G407413
TU467961 other downstream 1654245 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU465509 other downstream 3800519 2017687 ~ 2018050 (-) True G405053
TU468694 other upstream 607868 6532144 ~ 6534655 (-) True G407899

Expression Profile