RNA id: CI01000299_05802706_05815472.mRNA


Basic Information

Item Value
RNA id CI01000299_05802706_05815472.mRNA
length 1723
RNA type mRNA
GC content 0.50
exon number 14
gene id CI01000299_05802706_05815472
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5802504 ~ 5815472 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTTCCCAGCACTAAAGAACGTGTTTTTGGGCTTTGTCCGGACATCAAGCCTGCCAGATGTCCTGCAGAACAACATGAAGGTCCTGTCGGCGGGACTGAGGACTTATGAAGTTCCACCAGACTTCAGCGACGTGGTTCTTCCAGAGAAGCCGAAACTGAAATTCCTGGAAAAGGTCCCGAATTTGAAACAAGCAAAGAAGGAGATGAAGAAGCTGCGTGACATCCAGGGACCGGCCAAAAGCGGCAATACCTTCACCAAAGGACAGTACGGCATTGTGGCTCTGGGTGGAGGATACTTGCACTGGGGTCACATGGAGATGATGCGGCTCACCATCAACCGCCGCATTGATCCCAGCACCACGTTTGCCCTGTGGCGCTTCAGTGCCCCTCACAAACCCATCACCCGTAAAGGACTGGGTCAACGCATGGGCGGCGGAAAAGGTGCCATCGACCACTACGTCACTCCAGTGAAATGCGGCCGGCTGGTAGTAGAGGTCGGAGGTCGCGTCGAGCTGGGTGAGGTGGAGGCGGTGCTCACAGAAGTGGCCAAGAAGCTGCCCTTTCCAGCCAAGGTGGTGAGCAGGGAGAGTCTGGCGGCGCTGCATCAGGAACAGGCCGAACGCGAGACCAACAACCAAAACCCCTGGACCTTCCAGAGGGTCGCGCGGGCCAACATGCTGGGCATTCGCAAAGTCCTGAGCCCGTTCGACATTCACAATCACGGACGCTACGCTGGGAAGTTTTACTACCCTAAAAGGCTTTTCATGATGAAACCAGCCCGAGGATCAGGAAGGGCATCCACACAGGGCCCCAAAGGAGCCGCAGAGAGGAAGATGCACAAACCTCAAAAGTCCAAGCCCACTGCTGAGGGCCCACATCTGGAGCCATCTAAGAAAAACTGCATTAAAACCTCAACAAAGGCTAAAAAGAGTAAGAATCAGGGAAATTGGAAGCCACTGACCAAGTCTTCCTTACTGGCTCTGGAGAACATGCTTAGTTTGTCGATTCTATCTGTTCTGGCATTGAAAAACAAAGAAAAAGAAGAATCACAGATGCATCTCAACCGCCTTAAAGATCGAAAACATGGAGACATTATGCGTGTGTCCCATCAGTTCAAAGCTGAGAGTAAGAAGTCCGAACACGGCAAGAAGACGCTTGAGTCTCTAGAGGAGAACATGGGCTCGATTGTTAGCACTCTTGAGGAGATGGAGGTGAAGACAGATCATTTGGAGGAGAAATGCAGGATGATGAGAAGCAAACTAGACGATGAAGAGGAAAAGGCACAGGAGTTTCTCCAACTGTCAGAACAGACGGTCCTGCGTCTTCCTGCTGTACCGTCTCGCCCTGCCAATGAGCCGACGCTACAGGAGCACCTGATGAAGATCGTCCCCAATCCTCCCGCAGTGGTCAGAGCACTTCAGACGGCTCCGGCACTCGGGGATGTGAGGGCCTTTCTGGAGCTCGCACATAAACAGGTGGATTCAGTACAAGCCGCTCATAGAGACACAGCCCTGGACTGACCTTCACAGAAGGAGACCGTTTAAGTTTACACAGACACAAACAGCTGATAAACAAAATAACTGCTTATTTATTTCAAAAATGAAAGAACTAGACACCGAAATTACATGCATCTCAAGCATTAATGCAACAATATCAACAATCAATGAATCAATTCAATTCAATTCAGAAGATTTAGCTTTCTCGCCTCTATCAGATAATATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468628 lncRNA downstream 26963 5774249 ~ 5775541 (-) True G407848
TU468538 lncRNA downstream 162638 5634840 ~ 5639866 (-) True G407764
TU468500 lncRNA downstream 247659 5552628 ~ 5554845 (-) True G407734
TU468429 lncRNA downstream 339332 5456864 ~ 5463172 (-) True CI01000299_05457285_05462908
TU468426 lncRNA downstream 384133 5413334 ~ 5418371 (-) True G407669
TU468580 lncRNA upstream 6103 5821575 ~ 5821591 (-) True G407801
TU468639 lncRNA upstream 114167 5929639 ~ 5930546 (-) True G407858
TU468606 lncRNA upstream 129903 5945375 ~ 5946025 (-) True G407827
TU468604 lncRNA upstream 148208 5963680 ~ 5969556 (-) True G407825
TU468662 lncRNA upstream 203070 6018542 ~ 6023664 (-) True G407881
CI01000299_05739937_05770480.mRNA mRNA downstream 31697 5739808 ~ 5770807 (-) True CI01000299_05739937_05770480
CI01000299_05602070_05604608.mRNA mRNA downstream 197889 5601983 ~ 5604615 (-) True CI01000299_05602070_05604608
CI01000299_05512316_05521322.mRNA mRNA downstream 281182 5512051 ~ 5521322 (-) True CI01000299_05512316_05521322
CI01000299_05478688_05502027.mRNA mRNA downstream 299236 5477482 ~ 5503268 (-) True CI01000299_05478688_05502027
CI01000299_05466693_05471714.mRNA mRNA downstream 330517 5465642 ~ 5471987 (-) True CI01000299_05466693_05471714
CI01000299_05818562_05822413.mRNA mRNA upstream 2934 5818406 ~ 5823867 (-) False CI01000299_05818562_05822413
CI01000299_05826769_05831144.mRNA mRNA upstream 10494 5825966 ~ 5831312 (-) False CI01000299_05826769_05831144
CI01000299_05831615_05835696.mRNA mRNA upstream 15919 5831391 ~ 5835808 (-) False CI01000299_05831615_05835696
CI01000299_05849494_05852270.mRNA mRNA upstream 33930 5849402 ~ 5852506 (-) True CI01000299_05849494_05852270
CI01000299_05856747_05860959.mRNA mRNA upstream 41244 5856716 ~ 5862986 (-) True CI01000299_05856747_05860959
TU468421 other downstream 346396 5455914 ~ 5456108 (-) True G407665
TU468235 other downstream 873686 4925968 ~ 4928818 (-) True G407509
TU468104 other downstream 1251783 4475994 ~ 4550721 (-) True G407413
TU467961 other downstream 1638180 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU465509 other downstream 3784454 2017687 ~ 2018050 (-) True G405053
TU468578 other upstream 3097 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other upstream 12364 5835889 ~ 5835989 (-) True G407805
TU468694 other upstream 716529 6532144 ~ 6534655 (-) True G407899

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000050 False 949 mRNA 0.52 9 NC_007112.7 532766 ~ 549521 (+)