RNA id: CI01000299_05466693_05471714.mRNA


Basic Information

Item Value
RNA id CI01000299_05466693_05471714.mRNA
length 4099
RNA type mRNA
GC content 0.50
exon number 8
gene id CI01000299_05466693_05471714
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5465642 ~ 5471987 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAAGGAGAGTTGAATCTCGAGGAGACAGTGAGGGAAAACTGCCCACTTTTGATGCTTTTTAAGACTTGTCTTTTCAACTGCTGCTAGAGACTGCGATCGTTTTATTTATTTCCATTTTGAGTCGACTTCAGCTCTGGATTGGTACCTATTGCAGTTTTCTGGTTTTGTTTCTGTCTACCAGCTCCGGGAGTCAAATTCTCAAAGAACTAAAACTTTGTAAGGATTTCCATTGGGGTCCATCATTTTGCTCTTGAGAACCCAACAGGAATATAATGTCTTTTTTGCGCGTCATACTGGGTTTCGTTGCAGCGCTGTGCGTAAACGCGGCGCAGAGCGCGTGGGAGGAGAGCACCGTGGTGCCGGTCCGGCTCGACTCGTACGGCACCGAAGCGACCCATACAGCAGAAGCACGGGAAAAGGAATCCGAGAAACGCATCTATCGCTTGGACGTCTTTGGAAATCAGATGGTGTTGGTGCTGGAACCGGATCAGACCTTTTTAGCGCCTGGGTTTGTGTTCCAGATGGTGGGGAAACCGGAGTCCGAGGAGTTTGACAGCGCGGGACAGGCGCAGTGCTTCTTCTCGGGGGCCGTGAACGGAGAAGAACTTTCCGCTGCGGCGATCAATCTGTGCAATGGACTGCGGGGCGGCTTCTATGTCGGCGGCGAAGAGTACTTCATCCAACCCGCGAACGCCAGCGGAGAGGCTTCGGATGGAGACATCCATATCATCCGCAGAAGAAAACGGGGGTTGTTGGCTGAGGAGAACGGTTCTAAGTGTGGGGTAAACGAGGAGGAGGAACGGGTCGCCGAGAAACCATTTGCAACCAAATCCGAGCCCATTCCATCTGAGTCTAAAGCACACCACAGATCCCGTCGCTTTGTGTCGACTCCTCGCTATTTGGAGATCATGATTGTGGCAGACCAGTCAATGGCAGAGTTTCATGGAGCTGGGCTCAAAACTTACCTGCTGACCATCATGGCAGTAGCATCTCGTCTGTATCGACACCCTACCATTCATAACTCGATCACTCTGGCAGTTGTGAAGCTTCTTGTTGTGTACAATGAAGAGCACGGTCCCCAGGTGTCCTCCAATGCAGCGCTTACCCTTAGGAACTTCTGCCAGTGGCAAAAGCAGCACAACCCACCAAGTGACCGGCACCCTGAGCATTACGACACAGCAGTACTGTTCACCAGACAGGATCTTTGTGGTGCTCATTCTTGTGACACTCTGGGAATGGCGGATGTGGGCACTGTGTGCGATCCTGATCGAAGTTGCTCCATTGTTGAAGATGACGGCCTCCAAGCAGCCTTCACCGTAGCACATGAGCTTGGTCACGTGTTCAACATGCCCCATGATGATGCCAAACAATGTGCCAGCGTTAATGGAGACCAGTGGAGCGCCCACATGATGGCCTCGACCTTGTCCAATCTGGACCAGCTACAGCCCTGGTCTCCTTGCAGTGCCCTGATGGTCACAACCTTCCTGGACAATGGCCATGGTCAGTGTTTACTGGACAAGCCCCAGAAGCCTCAGCAGTTGCCCCAGGCTCTGCCAGGTTCAGTTTACGATGCCGACAGACAGTGCCGTCTCACATTTGGAGAGGAGTCCCAGCACTGTCCTGACCTGAGCACCACTTGTGCCGCACTTTGGTGCACCGTCACAGCTACAAATGGCTTGCTGGTCTGCCAAACCAAGAACTTTCCATGGGCCGATGGGACGCCTTGCGGGTCTGACAGCTACTGTATGGCAGGACGATGCTTGAGCAAGGCCGAGGCTGCCAGATATCAGACTCCAGTCAATGGCGGATGGGGAACTTGGGGATCTTGGGGAGATTGCTCACGTACCTGTGGAGGAGGTGTGCAATACTCTTTTAGGGACTGTGACAATCCCCAACCCAAAAATGGAGGCAAATACTGCGAGGGCAAGAGAATTCAGTACCGCTCCTGCAACACCGAGGCCTGCCCTGATAGCAATGGTTTGACATTCCGTGAGGAACAGTGTTTGGCCCACAATGACATCTCCTCTCAGGTGTCATTCGGCTCAGGAGAAGGTGTCGAGTGGGTGCCGAAGTATGCGGGAGTCTCTCCCAAGGACCGCTGCAAGTTGGTGTGCCGAGCAAAGGGAACTGGGTACTTCTTCATTCTGAAGCCAAAGGTTGCTGATGGAACACCATGCACCCCGGATTCCACCTCAGTCTGTGTCCAAGGCCAGTGTGTGAAGGCTGGTTGTGACCGGGTCATTGGTTCCAACAAGCGTTTCGACAAATGCGGCATCTGTGGAGGAGATGGATCTACTTGCAAGAAAGTTTCTGGATCAATGGAACGTGCTATACCGGGCTATCAGGACATAGTGACGATCCCAGCTGGTGCCACGCACCTAGATGTTAAGCAGCGCTCTCTTGGAGGCCGCCGCCATGACAATAGCTACCTAGCAGTTCGCCGGCAAGATGGCACGTACCTACTGAACGGCGACTATAAGCTGATGACTTTAGAGACTGATATCTCTCTGAAAGGTGCACTTCTGCGATACAGTGGTTCCTCTGCCACACTGGAGCGCCTCCGAAGCTTCGCTCCCTTACCTGAGGCTCTTACTATCCAGGTGTTGTCAGTTGGCGATTCCCCAAGACCTCGCGTAAAGTACAGCTACTTTGCTCCACGTCCCATTGGGTCAAATCGTCCATCCATTAATGCCATTAGTGAAGCAGGAGATGCCGAATGGGCCCTACGTGAGTGGGGACCTTGTTCGCAGACCTGCGGTGGTGGTATCCAGAAGCGGGACGTCCTTTGCCTTGATGCTTACGGCCATCAGTCAAAAGACTGTCCTGAAGAGCTGCGCCCTGCGTCATCACAATCCTGTGCTCTGCAGGCGTGCCCATCCTGGCTGCAGGGGGAGTGGTCCGATTGTTCCAAAGCATGCGGCAGAGGCTATCGCAAGCGTCAGCTGCGCTGCATCGGACACGATGGTCGCATTTTGCCTAACGAGAGCTGCAACGTTAAAAATCAGCCACGACCTCGCTTGGAATTGTGCAACCTGACTCCCTGTTGAAACTGAACACTGAGGCTTGCAACAACCTCGAACGGCTGTAAGTTGGTGCTTTGGATTCAAAGGGCCCTTTATGACAGAGACTGCAACCAAACTTCTTTCACCCATCCAACACTGGGTACAGGGCACAAAGCTGGCACACAGTGTACCTGTCTTGACAGCTGTGATGGAGGAGAAGAATACGAACACCTCTGCTGCTTTGGATGCTGATGTCATGCATGTTAGATTTTGAGTGTGCGTGGGTGTGTATGATGGATGATTCATGAAAGAGTGCATGAAACAGCTATGCATTTGTACCGTCTGTCTGAGCTGGACTAGACAGACAGGTTTAATTTGTCACAAGAGGGCATATAGGCGCTAATGTCTTTTCCTAGGGTCAAGAGCCGTACCGAGACAAAGGAGTTCATTAGTAGTGGTGTTTTATATAAAGCACCCTCTAGTGGTTCTCCATTTAAAAGTTGCAAACTCAAAGCACATATTTAACAAATGCATTTTCTTGCCAAAATCAATACCATATCTCACCTCAGCTAGGCACACATGCTGCTAATCAAACACCACAACAGGTATTATGCATTTCCGCATAATTAAGTTTAAGAACGCACATTAGCTTAACGTTTAGCTTCATAGGTTGATATTTTCAGCATTTTGCAAAGCCATACCCGATCAAGAGGGATCATATCTTTTTTTCAAGGGGGAGGGTGACCAAAGACCATAGGATTTATACCTGAGGAGAGAGTGTGTTTGTGCGAGTGTGTGTTTATGTATGTGTGGGTTAGTGTTGTGTGATTGTGTGGAGGACTTCTCTCCTACTACTACTTCATAAGTAATCCTCTCCTGCCTTCTGAGAAGGTATCTTTGTAATGAGGTGTCTTTTTTGTACAGAATATTCAAACGTTATTTATTTTTGTACAGCCCATTTAATATAATCTTGTTGCTTTTTTATAATTATTGTATTTCTATTTGTTGTTGTTATTGTTGTTATTGAAATAACTGAAGGATGTAGATTATATTAGAGTATTTATACAATATCTATGATCTTAGGTTTATGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468429 lncRNA downstream 2470 5456864 ~ 5463172 (-) True CI01000299_05457285_05462908
TU468426 lncRNA downstream 47271 5413334 ~ 5418371 (-) True G407669
TU468329 lncRNA downstream 283280 5085394 ~ 5182362 (-) False G407591
TU468330 lncRNA downstream 354408 5085394 ~ 5111234 (-) True G407591
TU468298 lncRNA downstream 468733 4957987 ~ 4996909 (-) True G407565
TU468500 lncRNA upstream 80641 5552628 ~ 5554845 (-) True G407734
TU468538 lncRNA upstream 162853 5634840 ~ 5639866 (-) True G407764
TU468628 lncRNA upstream 302262 5774249 ~ 5775541 (-) True G407848
TU468580 lncRNA upstream 349588 5821575 ~ 5821591 (-) True G407801
TU468639 lncRNA upstream 457652 5929639 ~ 5930546 (-) True G407858
CI01000299_05457285_05462908.mRNA mRNA downstream 2151 5457107 ~ 5463491 (-) False CI01000299_05457285_05462908
CI01000299_05428160_05443433.mRNA mRNA downstream 22209 5427661 ~ 5443433 (-) False CI01000299_05428160_05443433
CI01000299_05419449_05423414.mRNA mRNA downstream 42228 5419403 ~ 5423414 (-) True CI01000299_05419449_05423414
CI01000299_05379545_05381902.mRNA mRNA downstream 83502 5379149 ~ 5382140 (-) True CI01000299_05379545_05381902
CI01000299_04913779_04927715.mRNA mRNA downstream 537927 4913373 ~ 4927715 (-) False CI01000299_04913779_04927715
CI01000299_05478688_05502027.mRNA mRNA upstream 5495 5477482 ~ 5503268 (-) True CI01000299_05478688_05502027
CI01000299_05512316_05521322.mRNA mRNA upstream 40064 5512051 ~ 5521322 (-) True CI01000299_05512316_05521322
CI01000299_05602070_05604608.mRNA mRNA upstream 129996 5601983 ~ 5604615 (-) True CI01000299_05602070_05604608
CI01000299_05739937_05770480.mRNA mRNA upstream 267821 5739808 ~ 5770807 (-) True CI01000299_05739937_05770480
CI01000299_05802706_05815472.mRNA mRNA upstream 330517 5802504 ~ 5815472 (-) True CI01000299_05802706_05815472
TU468421 other downstream 9534 5455914 ~ 5456108 (-) True G407665
TU468235 other downstream 536824 4925968 ~ 4928818 (-) True G407509
TU468104 other downstream 914921 4475994 ~ 4550721 (-) True G407413
TU467961 other downstream 1301318 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU465509 other downstream 3447592 2017687 ~ 2018050 (-) True G405053
TU468578 other upstream 346582 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other upstream 355849 5835889 ~ 5835989 (-) True G407805
TU468694 other upstream 1060014 6532144 ~ 6534655 (-) True G407899

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001481 True 2736 mRNA 0.54 10 NC_007112.7 673163 ~ 681116 (-)