RNA id: CI01000299_05428160_05443433.mRNA


Basic Information

Item Value
RNA id CI01000299_05428160_05443433.mRNA
length 2539
RNA type mRNA
GC content 0.53
exon number 17
gene id CI01000299_05428160_05443433
representative False

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5427661 ~ 5443433 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTTTAGACTGACGTTCTGCCGTTATATCAGGCCAATCCTGGTGTTTTGGCTTCATCCTAATCCACCTCCTGTACTGAACCTGTCCTTCACCGGTGGTGGGAACGGACTTTGTTGCTTGTCAGGCCTTTTATATGTGCCGTCAGACTCCGGTACCGGACTGCTGGCCGAGCCGCAGGTCGCCATGTTCTGCGGGAAACTCAACATGCACATCAACGTTCAGACCGGAAAATGGGAACCCGATCCATCTGGAACCAAGAGCTGCATCGGAACAAAAGAGGGAATCCTGCAGTACTGCCAGGAGGTGTATCCAGAGCTTCAGATCACGAATGTGGTGGAGGCCAATCAGCCCGTCAGTATCTGGGACTGGTGCAAGAAGGGCCGCAAGCAGTGCCGCAGTCACATGCACATCGTGGTGCCCTACCGCTGCCTGGTGGGTGAGTTCGTGAGCGACGCTCTGCTGGTTCCTGACAAGTGTAAGTTCCTGCACCAGGAGCGCATGGACATGTGTGAGAGTCACCTGCACTGGCACACCGTCGCCAAAGAGTCTTGCGGTGACCGTAGCATGAATCTCCATGACTACGGGATGCTGTTGCCGTGTGGTATCGACCGTTTCCGTGGCGTTGAGTTCGTCTGCTGCCCTGCGGAAGCGGAGAAGGAGTCGGACAGCGCTGCCGTGGAGGAGGATGATTCTGATGTGTGGTGGGGAGGAGCGGAGGCCGACTACAGCGAGAACAGAGGTGTGTTTTGCAAGCGCAGAGACGGGCCCCTGCAGGGCCATGTTGCCCCGCTGTCGTTTATGTCAATGACTTCACTACAAACCTTAAAGCTTCCTCGCTTCTCTCTTCATGACTTTATCTGTCAAATGCTGTTTAGACTTTACCCTCCGGACGCAGTGGACCGATACCTGGAGACGCCAGCGGACGAGAACGAACACACTCATTTCCTGAAGGCCAAAGAGAGTCTGGAGGCCAAACACCGCGAGCGCATGTCTCAGGTGATGAGGGAATGGGAAGAGGCCGAGAGACAGGCGAAGAGTTTACCGCGCAATGACAAGAAGGCCGTGATCCAGCACTTCCAGGAGAAGGTGGAGGCGCTGGAGCAGGAGGCGGCCAGCGAGCGTCAGCAGCTGGTGGAGACGCACATGGCTCGTGTGGAGGCGTTGCTGAATGACCGCCGGCGTCTGGCCCTCGAGAGCTACCTGTCTGCCCTGCAGGCCGATCCGCCCCGGCCGCGGCATGTGTTCAGCCTGCTGAAGAAGTACGTGCGCGCTGAGCAGAAGGACCGGCAGCACACGCTCAAACACTTCGAACACGTGCGCATGGTCGACCCCAAGAAGGCTGCGCAGATTCGGCCGCAGGTGCTGACCCATCTGCGTGTGATCGAGGAGCGGATGAATCAGTCTCTCGGGCTGCTGTACAAGGTGCCGGGAGTCGCTGATGATATCCAGGACCAAGTCGAGCTGTTGCAGCGCGAGCAGCAGGAGATGTCAGCTCAGCTGGCGAACCTGCAGAGCGACGTGCGGGTCAGTTACGGTAACGACGCCCTGATGCCCGACAGCACCGCCAGCCTGGACCTGCTGCCCGCTGAAGACACGCAGGGCTTCGGCTTCATTCACCCCGAGAGCTTCAACCAGCCCAACACACAGAACGAGGTTGAGCTGGTCGATGCCCGACCTGTCGCAGACCGAGGCCTCCCGACCCGACCAGTGTCTGGACTGAAGCCTGACGATGTTCCTGAGCTGCGGATGGAAGCCGAAGAGAGACACAGCGAAGTTTACCACCAGAAACTGGTTTTCTTTGCGGAGGATGTGAGCTCCAATAAAGGAGCTATTATTGGCCTGATGGTCGGAGGAGTTGTCATAGCAACCATCATCGTCATCACCCTGGTGATGCTGAGGAAGAAGCAGTACACGTCCATCCACCACGGAATCATTGAGGTGGACGCTGCCGTGACCCCGGAGGAACGTCACCTGTCCAAGATGCAGCAGAACGGCTATGAAAACCCCACCTACAAGTTCTTCGAGCAGATCCACAACTGATGGCGTAACGCCTCCCCCCTCACCCTCACCCTCCCCGTACCCTCATCTCCAGACGCTGCAGAAGACACCAGCCGAATCTCACCGCGTCATAAACATCACGTCTGTTATTGGCCAGTTTCTGTGACTGTCAATCAAAGACGACCTCCCACTGGCTGGATGAACATTCACATGATCAGATTAGTTCTGTTGGGGTCAGTTTCAGGTTGTTGAAGATTCTGTTTCAGATTGAATGCACAATTCAAATCACAAATCAAATTGAATGCATAATTCAGTTTCAATTGGAATTCAAATCACAAATCAGATTGAACACAATTCAAGTTCAATTAAAATAAATTTGAATGCATAATTTGAATTCAGTTCACATCAAATGAACGTAATTCAAATTAATTTCAAATCAAAATGAACGCATAATTTCAAATTCATTTCAAATTAATTTGAACACAATTCAAATTCATTTCATATCAAATTAAACGCATAATTCGAATTCATTTCAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468426 lncRNA downstream 9290 5413334 ~ 5418371 (-) True G407669
TU468329 lncRNA downstream 245299 5085394 ~ 5182362 (-) False G407591
TU468330 lncRNA downstream 316427 5085394 ~ 5111234 (-) True G407591
TU468298 lncRNA downstream 430752 4957987 ~ 4996909 (-) True G407565
TU468297 lncRNA downstream 471296 4956098 ~ 4956365 (-) True G407564
TU468429 lncRNA upstream 13431 5456864 ~ 5463172 (-) True CI01000299_05457285_05462908
TU468500 lncRNA upstream 109195 5552628 ~ 5554845 (-) True G407734
TU468538 lncRNA upstream 191407 5634840 ~ 5639866 (-) True G407764
TU468628 lncRNA upstream 330816 5774249 ~ 5775541 (-) True G407848
TU468580 lncRNA upstream 378142 5821575 ~ 5821591 (-) True G407801
CI01000299_05419449_05423414.mRNA mRNA downstream 4247 5419403 ~ 5423414 (-) True CI01000299_05419449_05423414
CI01000299_05379545_05381902.mRNA mRNA downstream 45521 5379149 ~ 5382140 (-) True CI01000299_05379545_05381902
CI01000299_04913779_04927715.mRNA mRNA downstream 499946 4913373 ~ 4927715 (-) False CI01000299_04913779_04927715
CI01000299_04861862_04862244.mRNA mRNA downstream 565068 4861577 ~ 4862593 (-) True CI01000299_04861862_04862244
CI01000299_04741460_04746667.mRNA mRNA downstream 680994 4741447 ~ 4746667 (-) True CI01000299_04741460_04746667
CI01000299_05457285_05462908.mRNA mRNA upstream 13674 5457107 ~ 5463491 (-) False CI01000299_05457285_05462908
CI01000299_05466693_05471714.mRNA mRNA upstream 22209 5465642 ~ 5471987 (-) True CI01000299_05466693_05471714
CI01000299_05478688_05502027.mRNA mRNA upstream 34049 5477482 ~ 5503268 (-) True CI01000299_05478688_05502027
CI01000299_05512316_05521322.mRNA mRNA upstream 68618 5512051 ~ 5521322 (-) True CI01000299_05512316_05521322
CI01000299_05602070_05604608.mRNA mRNA upstream 158550 5601983 ~ 5604615 (-) True CI01000299_05602070_05604608
TU468235 other downstream 498843 4925968 ~ 4928818 (-) True G407509
TU468104 other downstream 876940 4475994 ~ 4550721 (-) True G407413
TU467961 other downstream 1263337 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU465509 other downstream 3409611 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 3546673 1855639 ~ 1880988 (-) True G404976
TU468578 other upstream 375136 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other upstream 384403 5835889 ~ 5835989 (-) True G407805
TU468694 other upstream 1088568 6532144 ~ 6534655 (-) True G407899

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001478 False 2049 mRNA 0.58 18 NC_007112.7 621374 ~ 656693 (-)
bowfin (Amia calva) AMCG00014102 True 5020 mRNA 0.60 15 CM030128.1 1858678 ~ 1869442 (+)