RNA id: TU468298


Basic Information

Item Value
RNA id TU468298
length 283
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G407565
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4957987 ~ 4996909 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCGTAAAAGTCTGTTTGCAAAGCCTGCGCCGAAATGCGATTGATTTACCAAAGAATCCACAGTGAAATGTACCGAATACAAATAAATAAAGCTCAACTGAGACATTCACATTGTTGAAAATAAATAACCATATTCCTAGCATTAGGATCCTTTGAAAGGTAATGTTATTTTAGTCCTGTATCACTCTTCTCTCCTCCTCATCTCACTAACACACCAGTGGGCGGGGCTAACACTGCAATGATGAAGTAGGCGTTGATTTCTTCTGTGGAGGCGGAGTTTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468297 lncRNA downstream 1622 4956098 ~ 4956365 (-) True G407564
TU468295 lncRNA downstream 18048 4939691 ~ 4939939 (-) True G407562
TU468257 lncRNA downstream 134436 4822041 ~ 4823551 (-) True G407526
TU468182 lncRNA downstream 253186 4704124 ~ 4704801 (-) True G407475
TU468184 lncRNA downstream 279759 4678018 ~ 4678228 (-) True G407477
TU468329 lncRNA upstream 88485 5085394 ~ 5182362 (-) False G407591
TU468330 lncRNA upstream 88485 5085394 ~ 5111234 (-) True G407591
TU468426 lncRNA upstream 416425 5413334 ~ 5418371 (-) True G407669
TU468429 lncRNA upstream 459955 5456864 ~ 5463172 (-) True CI01000299_05457285_05462908
TU468500 lncRNA upstream 555719 5552628 ~ 5554845 (-) True G407734
CI01000299_04913779_04927715.mRNA mRNA downstream 30272 4913373 ~ 4927715 (-) False CI01000299_04913779_04927715
CI01000299_04861862_04862244.mRNA mRNA downstream 95394 4861577 ~ 4862593 (-) True CI01000299_04861862_04862244
CI01000299_04741460_04746667.mRNA mRNA downstream 211320 4741447 ~ 4746667 (-) True CI01000299_04741460_04746667
CI01000299_04708767_04714088.mRNA mRNA downstream 243899 4708503 ~ 4714088 (-) True CI01000299_04708767_04714088
CI01000299_04658984_04668843.mRNA mRNA downstream 288965 4658895 ~ 4669022 (-) True CI01000299_04658984_04668843
CI01000299_05379545_05381902.mRNA mRNA upstream 382240 5379149 ~ 5382140 (-) True CI01000299_05379545_05381902
CI01000299_05419449_05423414.mRNA mRNA upstream 422494 5419403 ~ 5423414 (-) True CI01000299_05419449_05423414
CI01000299_05428160_05443433.mRNA mRNA upstream 430752 5427661 ~ 5443433 (-) False CI01000299_05428160_05443433
CI01000299_05457285_05462908.mRNA mRNA upstream 460198 5457107 ~ 5463491 (-) False CI01000299_05457285_05462908
CI01000299_05466693_05471714.mRNA mRNA upstream 468733 5465642 ~ 5471987 (-) True CI01000299_05466693_05471714
TU468235 other downstream 29169 4925968 ~ 4928818 (-) True G407509
TU468104 other downstream 407266 4475994 ~ 4550721 (-) True G407413
TU467961 other downstream 793663 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU465509 other downstream 2939937 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 3076999 1855639 ~ 1880988 (-) True G404976
TU468421 other upstream 444428 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 821660 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other upstream 830927 5835889 ~ 5835989 (-) True G407805
TU468694 other upstream 1535092 6532144 ~ 6534655 (-) True G407899

Expression Profile