RNA id: TU468584


Basic Information

Item Value
RNA id TU468584
length 101
RNA type TUCP
GC content 0.41
exon number 1
gene id G407805
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5835889 ~ 5835989 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATCATCATCATCAGTATCATTGCTGCAGTAGATGCGACCAGAAGCAACACCAATATGAGGAACAATACTTTGCTTTTTTGGGTTCTATTACTCGTGGACGGTGTGTTTGGTTCTGATAAAGTGATATCAGTGTCAGTGATGGAGGGAGATTCTGTCACTCTACGCATCGATCTCGCTGAAATAAAGGGAGTTAGTAAGATAATATGGAAATATGGTGTTGATGTCATAGCTAAAATTCAAGATGGAACCCCTTCTTTTCCCCATTCTGATGAGAGATTCACAGACAGACTGAAGCTGGACGAACAGACGGGATCACTGACCATCACAAACATCAGAACTGAACATGCAGGAGACTATAGTGTAGACATCAAGACTACAATTGCAAATCTGACTAAATTCAAAGTTACTGTCCATGATAATGTGGAGTCAGTGCCAGTGATGCAGGGAGATTCTGTCAGTCTACACACTGGTGTTACTGATATACAGAGAGATGATCAGATACTGTGGAAGTTTGGAGATCAGGTCATCCTCACTGATGGCTTAAACACCGCTGTTGATGAAAGATGGAGGAACATTGATCTAAATGCTCAAACCCGAGAAATCACCATCAGAAACATCAGAATCGATCAGTCTGGATATTATAAAATGGAGTTCAACAGCATCAGAATGATCTTACACAAGAAATTCAGTGTTACTGTTGGTGGTGTGTTTAGTAATGAGAAAGATGGAGTGAAGACGGTGTCAGAGAAGAAGGGAAATGATGTACTTCTACACACTCGCGTGACTGAAATAGAAAAAGATGATCCGATAGAGTGGACATTTGGACCTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468628 lncRNA downstream 52295 5774249 ~ 5775541 (-) True G407848
TU468538 lncRNA downstream 187970 5634840 ~ 5639866 (-) True G407764
TU468500 lncRNA downstream 272991 5552628 ~ 5554845 (-) True G407734
TU468429 lncRNA downstream 364664 5456864 ~ 5463172 (-) True CI01000299_05457285_05462908
TU468426 lncRNA downstream 409465 5413334 ~ 5418371 (-) True G407669
TU468639 lncRNA upstream 93650 5929639 ~ 5930546 (-) True G407858
TU468606 lncRNA upstream 109386 5945375 ~ 5946025 (-) True G407827
TU468604 lncRNA upstream 127691 5963680 ~ 5969556 (-) True G407825
TU468662 lncRNA upstream 182553 6018542 ~ 6023664 (-) True G407881
TU468666 lncRNA upstream 189036 6025025 ~ 6025802 (-) True G407884
CI01000299_05818562_05822413.mRNA mRNA downstream 3969 5818406 ~ 5823867 (-) False CI01000299_05818562_05822413
CI01000299_05802706_05815472.mRNA mRNA downstream 12364 5802504 ~ 5815472 (-) True CI01000299_05802706_05815472
CI01000299_05739937_05770480.mRNA mRNA downstream 57029 5739808 ~ 5770807 (-) True CI01000299_05739937_05770480
CI01000299_05602070_05604608.mRNA mRNA downstream 223221 5601983 ~ 5604615 (-) True CI01000299_05602070_05604608
CI01000299_05512316_05521322.mRNA mRNA downstream 306514 5512051 ~ 5521322 (-) True CI01000299_05512316_05521322
CI01000299_05849494_05852270.mRNA mRNA upstream 13413 5849402 ~ 5852506 (-) True CI01000299_05849494_05852270
CI01000299_05856747_05860959.mRNA mRNA upstream 20727 5856716 ~ 5862986 (-) True CI01000299_05856747_05860959
CI01000299_05896205_05898855.mRNA mRNA upstream 60054 5896043 ~ 5898857 (-) False CI01000299_05896205_05898855
CI01000299_05919510_05924061.mRNA mRNA upstream 83139 5919128 ~ 5924628 (-) False CI01000299_05919510_05924061
CI01000299_05927821_05933216.mRNA mRNA upstream 91325 5927314 ~ 5934832 (-) True CI01000299_05927821_05933216
TU468421 other downstream 371728 5455914 ~ 5456108 (-) True G407665
TU468235 other downstream 899018 4925968 ~ 4928818 (-) True G407509
TU468104 other downstream 1277115 4475994 ~ 4550721 (-) True G407413
TU467961 other downstream 1663512 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU465509 other downstream 3809786 2017687 ~ 2018050 (-) True G405053
TU468694 other upstream 696012 6532144 ~ 6534655 (-) True G407899

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00042056 True 1217 lncRNA 0.39 7 NC_007133.7 8800455 ~ 8808460 (+)