RNA id: CI01000299_05818562_05822413.mRNA


Basic Information

Item Value
RNA id CI01000299_05818562_05822413.mRNA
length 2123
RNA type mRNA
GC content 0.40
exon number 4
gene id CI01000299_05818562_05822413
representative False

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5818406 ~ 5823867 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATGTACTTGTATGTGTGTAAATGTTTGGCCATAAAACCTCAGAATTTCATTATTTTTCATTATATTCATGATGACTGAGCGATTCTGATGAGGACACCAAAAAGCACTTTATAGTGATATTTACCCGTATGGTAAAAATGTTCATTACTCAAAGCTTTTCAAAACGGTGCACACTAACGACATCTTGTGGTCAAAAGGTGGAAAAAGATGCCTTTGTGTCCCAGACGACCCAGACATTTTTGGGCACAATTAGTCTATATATATATATATATATATATATATATATATATATATATATATATATAAAAGTAATGTTTTTCACATGCCATTTTACACAATTTGAATAAATTATACATTTCTGGGAAAAAAATAGGCAAGCTTAAGCATATATTAGCAAAATAAATGAAGATTATCATAGAATGGTCAGCTGAAGTACTTATGAGCTAGGAATAAATACAAACTGAACATGCACAAAAACTACACATGTAAATATTTATAGTATGTTGCAACAATCCTTATCCTTATAAAAAGAAAATCATTGTTAGGCATGGCTGTGTTTCCAGTTTGTTTTATTATGCAATACATAGGCATTAATTTCATATTTCAAGCATGTTGTTTGTGCACTTAATGTAATAAACATCATACATTAGAGAAATAGGTTATAATTAGTCAAGACATCACGATAACAACTTTTAAACAGGCATTACCACCTGGGTCCTAAAGGAGACTTGATTTCTGGGGAGGGGGACTCGATTTCTCATGACACCGGTACAGACGGCATAACTGTAGCTGAATGAACCACACAAACCCGAAGACTCAATTCTGTTTCCGGTGGTACAGCTAGATATGACGTGACAAAACAATGAACTACAGATCGGGATGTGAGGTAATCTAACAGACTGCACAGCCTGGAGCAATGAATCAATCATTTCTGTTTGTCATAATTTGGCCTTGGTTGCATTATTGCTTTTTTTCTTATTCAAAATACACCGATCAGCATAACATTATGACACTGACAGGTGAAGTGAATAACACTGATCATCTCTTCATCACGGCACCTGTTAGTGGGTGGATATATTAGGCAGTTGATGTGTTAGAAGCAGGAAAAATGGGCAAGCATAAGGATTTGAGCGAGTTTGACAAGGGCCAAATTGTGATGGCTAGACGACTGGGTCAGAGCATCTCCAAAACTGCAGCTCTTGTGGGATGTTCCCGGTCTGCAGTGGTCAGTATCTATCAGAAGTGGTCCAAAGAAGGAACAGTGGTGAACCGGTGACAGGGTCATGGGCGGCCGAGGCTCATTGATGCACGTGGGGAGCGAAGGCTGGTGAACGAGATTCAAAGTTCTGAGTCAGTAAAATGATCTGAACTTCCCATTACTAGGAGGAACGCAAAACACAAAATCTGCAAAAATCAATTGGTTGCTGAAACCAAGGCGGACTGCCAGCCACTGATGGGTCACGTGAAGATTGAACCCCTACAGGAGTCCTTTAAGGGGCAAAAACTGGTGAAAGTTAAACCATGGGTGAAAGTGTACCTGTTGAGCAGAATGTTCTGGTTGAGAAGAAAGGAGAAGGAAGGGATTGCTTTGTCGAATGCAAGAAATCAAGCGGAAAATGATGTGGAAGAGATGGAACGGGACGAGTCCGATGGAGAGGGTTTTGAAAAATGTATTAGGTCAGTGGCAATATTGCAAAAGATGCTGTCAAAGACAGCTCATGATCTGAGTAACATGGCGAGTGTGTATCTGGTGGATGTGGACACGGCGCCGGTGATTTTGATGCATTTCCACACATTCAGATCTCCAGATCATACCAAGTTTGTGGGAAGCTTCAAAACCAAACAGGACTTCATGGATCTGATTGAAGTGATCTATCACGGCGCCATGAGAGGTAAACTGATCGTCCGAAGCCCGATAGACCCGAGAAACATTCCCAAATATGATCTGCTGTACCACGACATCTAGCAGCAGTAATAGAGTCACTGACGGAGACTAAAGTGAGCTTTCAGATGATTGTCTAAACGAGAGGATGGAGAGTTTCCTGTGGAAGCGACAGTCTGAAGTATTTATTATGCCACACTTGTTTTGTGTCGTGATATTTTTCTATGTTTTTAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468628 lncRNA downstream 42865 5774249 ~ 5775541 (-) True G407848
TU468538 lncRNA downstream 178540 5634840 ~ 5639866 (-) True G407764
TU468500 lncRNA downstream 263561 5552628 ~ 5554845 (-) True G407734
TU468429 lncRNA downstream 355234 5456864 ~ 5463172 (-) True CI01000299_05457285_05462908
TU468426 lncRNA downstream 400035 5413334 ~ 5418371 (-) True G407669
TU468639 lncRNA upstream 105772 5929639 ~ 5930546 (-) True G407858
TU468606 lncRNA upstream 121508 5945375 ~ 5946025 (-) True G407827
TU468604 lncRNA upstream 139813 5963680 ~ 5969556 (-) True G407825
TU468662 lncRNA upstream 194675 6018542 ~ 6023664 (-) True G407881
TU468666 lncRNA upstream 201158 6025025 ~ 6025802 (-) True G407884
CI01000299_05802706_05815472.mRNA mRNA downstream 2934 5802504 ~ 5815472 (-) True CI01000299_05802706_05815472
CI01000299_05739937_05770480.mRNA mRNA downstream 47599 5739808 ~ 5770807 (-) True CI01000299_05739937_05770480
CI01000299_05602070_05604608.mRNA mRNA downstream 213791 5601983 ~ 5604615 (-) True CI01000299_05602070_05604608
CI01000299_05512316_05521322.mRNA mRNA downstream 297084 5512051 ~ 5521322 (-) True CI01000299_05512316_05521322
CI01000299_05478688_05502027.mRNA mRNA downstream 315138 5477482 ~ 5503268 (-) True CI01000299_05478688_05502027
CI01000299_05826769_05831144.mRNA mRNA upstream 2099 5825966 ~ 5831312 (-) False CI01000299_05826769_05831144
CI01000299_05831615_05835696.mRNA mRNA upstream 7524 5831391 ~ 5835808 (-) False CI01000299_05831615_05835696
CI01000299_05849494_05852270.mRNA mRNA upstream 25535 5849402 ~ 5852506 (-) True CI01000299_05849494_05852270
CI01000299_05856747_05860959.mRNA mRNA upstream 32849 5856716 ~ 5862986 (-) True CI01000299_05856747_05860959
CI01000299_05896205_05898855.mRNA mRNA upstream 72176 5896043 ~ 5898857 (-) False CI01000299_05896205_05898855
TU468421 other downstream 362298 5455914 ~ 5456108 (-) True G407665
TU468235 other downstream 889588 4925968 ~ 4928818 (-) True G407509
TU468104 other downstream 1267685 4475994 ~ 4550721 (-) True G407413
TU467961 other downstream 1654082 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU465509 other downstream 3800356 2017687 ~ 2018050 (-) True G405053
TU468584 other upstream 3969 5835889 ~ 5835989 (-) True G407805
TU468694 other upstream 708134 6532144 ~ 6534655 (-) True G407899

Expression Profile